RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 MTMR1Q13613 665 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 PLPPR4Q7Z2D5 763 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 ZNF598Q86UK7 904 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 SHDQ96IW2 340 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 DDX23Q9BUQ8 820 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 MAN1C1Q9NR34 630 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 PATJQ8NI35 1801 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 AKAP13Q12802 2813 aa17.62■□□□□ 0.41
CLSTN3-216ENST00000545663 DOCK8Q8NF50 2099 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 ZBTB42B2RXF5 422 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 ACTR2P61160 394 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 NMIQ13287 307 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 LONRF3Q496Y0 759 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 IFIT1BQ5T764 474 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 CMASQ8NFW8 434 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 STAMQ92783 540 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 TNPO1Q92973 898 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 CDHR1Q96JP9 859 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 SLC9A2Q9UBY0 812 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 UBIAD1Q9Y5Z9 338 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 DMXL2Q8TDJ6 3036 aa17.61■□□□□ 0.41
CLSTN3-216ENST00000545663 MIA3Q5JRA6 1907 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 INPPL1O15357 1258 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 B4GALT3O60512 393 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 LILRB3O75022 631 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 GALTP07902 379 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 SPATA31D3P0C874 917 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 ZSCAN20P17040 1043 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 TRAF1Q13077 416 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 SPATA31D4Q6ZUB0 917 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 ZNF707Q96C28 371 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 ZNF668Q96K58 619 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 EMILIN2Q9BXX0 1053 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 NRDE2Q9H7Z3 1164 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 SEMA4GQ9NTN9 838 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 DNAJB4Q9UDY4 337 aa17.6■□□□□ 0.41
CLSTN3-216ENST00000545663 SOBPA7XYQ1 873 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 ZIC2O95409 532 aaPredicted RBP17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 NCLP19338 710 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 MX1P20591 662 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 FGFR4P22455 802 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 SLC44A4Q53GD3 710 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 PARM1Q6UWI2 310 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 PRR23CQ6ZRP0 262 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 GET4Q7L5D6 327 aaPredicted RBP17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 SMG7Q92540 1137 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 FGF14Q92915 247 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 EVI5LQ96CN4 794 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 YTHDC1Q96MU7 727 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 JADE2Q9NQC1 790 aa17.59■□□□□ 0.41
CLSTN3-216ENST00000545663 ASH1LQ9NR48 2969 aaKnown RBP17.58■□□□□ 0.41
CLSTN3-216ENST00000545663 LAMA1P25391 3075 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 A0A0U1RQF3 1178 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 C2CD2LO14523 706 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 SLC11A1P49279 550 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 SEC23AQ15436 765 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 MLF2Q15773 248 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 METTL13Q8N6R0 699 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 LPPQ93052 612 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 UBAC1Q9BSL1 405 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 MRPL9Q9BYD2 267 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 GBP3Q9H0R5 595 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 LTB4R2Q9NPC1 389 aa17.58■□□□□ 0.4
CLSTN3-216ENST00000545663 EVPLQ92817 2033 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 PIK3CDO00329 1044 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 RETP07949 1114 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 GRM4Q14833 912 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 LAIR1Q6GTX8 287 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 PRR23BQ6ZRT6 265 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 CUL5Q93034 780 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 ADAMTS10Q9H324 1103 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 SENP2Q9HC62 589 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 PRMT8Q9NR22 394 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 TBC1D13Q9NVG8 400 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.57■□□□□ 0.44e-6■■□□□ 12.1
CLSTN3-216ENST00000545663 RAB23Q9ULC3 237 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 SMG1Q96Q15 3661 aaKnown RBP17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 LOC400499M0QZD8 3231 aa17.57■□□□□ 0.4
CLSTN3-216ENST00000545663 MEIS3P2A8K0S8 358 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 HBP1O60381 514 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 C22orf31O95567 290 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 TARSP26639 723 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 NLRP11P59045 1033 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 MTAPQ13126 283 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 FZD5Q13467 585 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 CSRP2Q16527 193 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 C20orf194Q5TEA3 1177 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 TAS1R1Q7RTX1 841 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 ZNF280BQ86YH2 543 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 CLDN23Q96B33 292 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 MYL10Q9BUA6 226 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 OSBPL6Q9BZF3 934 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 KCNH7Q9NS40 1196 aa17.56■□□□□ 0.4
CLSTN3-216ENST00000545663 CSDE1O75534 798 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 ATG7O95352 703 aa17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 TDGF1P13385 188 aa17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 ATP4AP20648 1035 aa17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 PRKCQQ04759 706 aa17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 ITGB3BPQ13352 177 aaPredicted RBP17.55■□□□□ 0.4
CLSTN3-216ENST00000545663 ZBTB41Q5SVQ8 909 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms