RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 BORCS6Q96GS4 357 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 GPATCH3Q96I76 525 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 DYDC2Q96IM9 177 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 LOXL4Q96JB6 756 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 HIST1H2AHQ96KK5 128 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 LMF1Q96S06 567 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 RBM15Q96T37 977 aaKnown RBP eCLIP4.38□□□□□ -1.71
USP28-210ENST00000542033 HIST1H2AJQ99878 128 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 PUS7LQ9H0K6 701 aaKnown RBP4.38□□□□□ -1.71
USP28-210ENST00000542033 MSL2Q9HCI7 577 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 POLR3BQ9NW08 1133 aaPredicted RBP4.38□□□□□ -1.71
USP28-210ENST00000542033 SMPD4Q9NXE4 827 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 DENND2AQ9ULE3 1009 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 USP18Q9UMW8 372 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 VWA7Q9Y334 891 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 PPP2R3BQ9Y5P8 575 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 MYPNQ86TC9 1320 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 PHLDB1Q86UU1 1377 aa4.38□□□□□ -1.71
USP28-210ENST00000542033 A0A0A6YYJ9 748 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 PRSS38A1L453 326 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 OPHN1O60890 802 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 H2AFYO75367 372 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 CNOT4O95628 575 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 XPAP23025 273 aaPredicted RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 CDKN1CP49918 316 aaPredicted RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 MRE11P49959 708 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 GUCY2FP51841 1108 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 MANFP55145 182 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 FAM50AQ14320 339 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 PDCD1Q15116 288 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 TRIM68Q6AZZ1 485 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 KLHDC10Q6PID8 442 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 CDYL2Q8N8U2 506 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 LPPQ93052 612 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 GFM2Q969S9 779 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 WDR92Q96MX6 357 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 PITHD1Q9GZP4 211 aaPredicted RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 KIAA1683Q9H0B3 1180 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 OR10A2Q9H208 303 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 METTL14Q9HCE5 456 aaKnown RBP4.37□□□□□ -1.71
USP28-210ENST00000542033 VTA1Q9NP79 307 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 C14orf119Q9NWQ9 140 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 PPP4R1LQ9P1A2 415 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 DNAI1Q9UI46 699 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 PTPN22Q9Y2R2 807 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 NR2E1Q9Y466 385 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 PCDHB6Q9Y5E3 794 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 WASHC2AQ641Q2 1341 aa4.37□□□□□ -1.71
USP28-210ENST00000542033 ARHGAP6O43182 974 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 DAPK3O43293 454 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 NRP2O60462 931 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 PFKMP08237 780 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 ADRB1P08588 477 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 ENPP1P22413 925 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 MAGEA10P43363 369 aaPredicted RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 ANTXR2P58335 489 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 EVA1CP58658 441 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 PPARAQ07869 468 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 ADAM15Q13444 863 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 NFYCQ13952 458 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 FSCN1Q16658 493 aaKnown RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 MAN2A1Q16706 1144 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 UGT8Q16880 541 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 CT83Q5H943 113 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 AGBL4Q5VU57 503 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 USP30Q70CQ3 517 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 LARP4Q71RC2 724 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP28-210ENST00000542033 LIMS2Q7Z4I7 341 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 CNTD1Q8N815 330 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 GIMAP8Q8ND71 665 aaPredicted RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 RSAD2Q8WXG1 361 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 GCDHQ92947 438 aaPredicted RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 MTMR8Q96EF0 704 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 NEIL1Q96FI4 390 aaPredicted RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 LRRC37BQ96QE4 947 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 PUF60Q9UHX1 559 aaKnown RBP4.36□□□□□ -1.71
USP28-210ENST00000542033 NUMBLQ9Y6R0 609 aa4.36□□□□□ -1.71
USP28-210ENST00000542033 FSBPO95073 299 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 LPLP06858 475 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 BUD31P41223 144 aaPredicted RBP4.35□□□□□ -1.71
USP28-210ENST00000542033 GPR15P49685 360 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 NRG3P56975 720 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 ITKQ08881 620 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.35□□□□□ -1.71
USP28-210ENST00000542033 HS1BP3Q53T59 392 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 CCDC178Q5BJE1 867 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 LMBR1LQ6UX01 489 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 AMOTL1Q8IY63 956 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 BCL6BQ8N143 479 aaPredicted RBP4.35□□□□□ -1.71
USP28-210ENST00000542033 OR14C36Q8NHC7 312 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 TGFBRAP1Q8WUH2 860 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 LMBR1Q8WVP7 490 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 GAB3Q8WWW8 586 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 EAF2Q96CJ1 260 aaPredicted RBP4.35□□□□□ -1.71
USP28-210ENST00000542033 RAX2Q96IS3 184 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 MENTQ9BUN1 341 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 SSBP3Q9BWW4 388 aaPredicted RBP4.35□□□□□ -1.71
USP28-210ENST00000542033 KRTAP9-8Q9BYQ0 159 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 HAPLN2Q9GZV7 340 aa4.35□□□□□ -1.71
USP28-210ENST00000542033 MEGF9Q9H1U4 602 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms