RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SHC4Q6S5L8 630 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 USP49Q70CQ1 688 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 SV2BQ7L1I2 683 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 DBF4BQ8NFT6 615 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 RNPC3Q96LT9 517 aaKnown RBP20.8■□□□□ 0.92
VPS33A-205ENST00000541169 NLRP4Q96MN2 994 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 PLIN2Q99541 437 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 OSMRQ99650 979 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 CHST12Q9NRB3 414 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 BLOC1S4Q9NUP1 217 aa20.8■□□□□ 0.92
VPS33A-205ENST00000541169 SIP14410 1827 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 A0A087WZ62 844 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 EFNA5P52803 228 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 SHHQ15465 462 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 RNF149Q8NC42 400 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 SLC9A7Q96T83 725 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 FDXACB1Q9BRP7 624 aaPredicted RBP20.79■□□□□ 0.92
VPS33A-205ENST00000541169 LARSQ9P2J5 1176 aaKnown RBP20.79■□□□□ 0.92
VPS33A-205ENST00000541169 PADI3Q9ULW8 664 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 COLQQ9Y215 455 aaPredicted RBP20.79■□□□□ 0.92
VPS33A-205ENST00000541169 SLC4A7Q9Y6M7 1214 aa20.79■□□□□ 0.92
VPS33A-205ENST00000541169 H0YCG3 227 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 SRGAP2CP0DJJ0 459 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 PTENP60484 403 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 DMP1Q13316 513 aaPredicted RBP20.78■□□□□ 0.92
VPS33A-205ENST00000541169 OTOP2Q7RTS6 562 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 ZBTB8OSQ8IWT0 167 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 SLC17A8Q8NDX2 589 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 VWCEQ96DN2 955 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 CCDC34Q96HJ3 373 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 TNMDQ9H2S6 317 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 IFT122Q9HBG6 1241 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 KCNH3Q9ULD8 1083 aa20.78■□□□□ 0.92
VPS33A-205ENST00000541169 AMHP03971 560 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 KRT18P05783 430 aaKnown RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 ZSCAN20P17040 1043 aaPredicted RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 GLRA2P23416 452 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 AXLP30530 894 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 CD52P31358 61 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 SMTNP53814 917 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 NFX1Q12986 1120 aaKnown RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 LRIT3Q3SXY7 679 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 GPBP1Q86WP2 473 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 PRIMPOLQ96LW4 560 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 NTPCRQ9BSD7 190 aaKnown RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 RUSC1Q9BVN2 902 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 AGO3Q9H9G7 860 aaKnown RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 CDHR5Q9HBB8 845 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 ERVK-5Q9HDB9 667 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 C1orf112Q9NSG2 853 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 DACT1Q9NYF0 836 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 ST3GAL5Q9UNP4 418 aa20.77■□□□□ 0.92
VPS33A-205ENST00000541169 NOC2LQ9Y3T9 749 aaKnown RBP20.77■□□□□ 0.92
VPS33A-205ENST00000541169 FAM237AA0A1B0GTK4 181 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 ZBBXA8MT70 800 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 HIP1RO75146 1068 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 CAPSQ13938 189 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 MCM6Q14566 821 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 DEPTORQ8TB45 409 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 ASAP3Q8TDY4 903 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 TMEM40Q8WWA1 233 aa20.76■□□□□ 0.91
VPS33A-205ENST00000541169 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 LRRIQ4A6NIV6 560 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 TBCAO75347 108 aaKnown RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 ERLIN2O94905 339 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 MYL1P05976 194 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 SKIP12755 728 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 PLS3P13797 630 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 NAALADL2Q58DX5 795 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 C9orf50Q5SZB4 431 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 CDCA2Q69YH5 1023 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 MAEAQ7L5Y9 396 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 FAM228AQ86W67 206 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 KSR1Q8IVT5 923 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 CEP57L1Q8IYX8 460 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 PDILTQ8N807 584 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 SPIRE2Q8WWL2 714 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 RSPH1Q8WYR4 309 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 MRPS27Q92552 414 aaKnown RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 PPP1R16BQ96T49 567 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 TSPYL2Q9H2G4 693 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-205ENST00000541169 GPRC5CQ9NQ84 441 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 KBTBD4Q9NVX7 518 aa20.75■□□□□ 0.91
VPS33A-205ENST00000541169 TET1Q8NFU7 2136 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 DENND3A2RUS2 1198 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 POLR2DO15514 142 aaKnown RBP20.74■□□□□ 0.91
VPS33A-205ENST00000541169 WDR5P61964 334 aaKnown RBP20.74■□□□□ 0.91
VPS33A-205ENST00000541169 E2F4Q16254 413 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 ARSHQ5FYA8 562 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 CNNM4Q6P4Q7 775 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 CLEC17AQ6ZS10 378 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 CATSPER4Q7RTX7 472 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 KCNN1Q92952 543 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 CCDC51Q96ER9 411 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 TRAIPQ9BWF2 469 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 PANK2Q9BZ23 570 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 PARVGQ9HBI0 331 aa20.74■□□□□ 0.91
VPS33A-205ENST00000541169 PRMT7Q9NVM4 692 aaPredicted RBP20.74■□□□□ 0.91
VPS33A-205ENST00000541169 SEL1LQ9UBV2 794 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms