RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MARCKSL1P49006 195 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 BAATQ14032 418 aaPredicted RBP18.39■□□□□ 0.53
USP28-208ENST00000540438 TKFCQ3LXA3 575 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 C10orf67Q8IYJ2 551 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 PPM1KQ8N3J5 372 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 MMGT1Q8N4V1 131 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 SLC35G2Q8TBE7 412 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 ZIM3Q96PE6 472 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 GOLGA6AQ9NYA3 693 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 F8VZ95 297 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 KIF4AO95239 1232 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 MARSP56192 900 aaKnown RBP18.39■□□□□ 0.53
USP28-208ENST00000540438 SEZ6Q53EL9 994 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 ZNF662Q6ZS27 426 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 FAM71BQ8TC56 605 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 CLEC4DQ8WXI8 215 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 TRIM51Q9BSJ1 452 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 NEUROG2Q9H2A3 272 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 RPAP3Q9H6T3 665 aaPredicted RBP18.39■□□□□ 0.53
USP28-208ENST00000540438 ZNRF3Q9ULT6 936 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 MYH11P35749 1972 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 CCDC66A2RUB6 948 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 ANKRD63C9JTQ0 380 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 PIK3CDO00329 1044 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 HPDP32754 393 aaPredicted RBP18.38■□□□□ 0.53
USP28-208ENST00000540438 HMGCS2P54868 508 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 PPP4R3CPQ6ZMV5 832 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 MAATS1Q7Z4T9 603 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 TPCN2Q8NHX9 752 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 KRIT1O00522 736 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 CCNE2O96020 404 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 PPP2R5CQ13362 524 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 LEKR1Q6ZMV7 388 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 EEPD1Q7L9B9 569 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 SLC30A5Q8TAD4 765 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 SYTL5Q8TDW5 730 aaPredicted RBP18.38■□□□□ 0.53
USP28-208ENST00000540438 INPP4AQ96PE3 977 aaPredicted RBP18.38■□□□□ 0.53
USP28-208ENST00000540438 RUFY1Q96T51 708 aa18.38■□□□□ 0.53
USP28-208ENST00000540438 PPP1R12BO60237 982 aaPredicted RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 ASNSP08243 561 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 EXOC4Q96A65 974 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 BORCS6Q96GS4 357 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 NOC2LQ9Y3T9 749 aaKnown RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 TTI1O43156 1089 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 FGGP02679 453 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 HARSP12081 509 aaKnown RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 TNFAIP3P21580 790 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 YWHABP31946 246 aaKnown RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 ERVK-9P63128 1117 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 FSTL1Q12841 308 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 ZNF772Q68DY9 489 aaPredicted RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 LRRC31Q6UY01 552 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 TXLNBQ8N3L3 684 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 GLG1Q92896 1179 aa18.37■□□□□ 0.53
USP28-208ENST00000540438 LUC7LQ9NQ29 371 aaKnown RBP18.37■□□□□ 0.53
USP28-208ENST00000540438 SMIM23A6NLE4 172 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 DHX15O43143 795 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 VCAM1P19320 739 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 RARRES1P49788 294 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 PDCLQ13371 301 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 TTMPQ5BVD1 217 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 SCARA3Q6AZY7 606 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 SUPT20HQ8NEM7 779 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 JDP2Q8WYK2 163 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 CAMKK2Q96RR4 588 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 TUFT1Q9NNX1 390 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 OLFML3Q9NRN5 406 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 COG5Q9UP83 839 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 PCDHGC5Q9Y5F6 944 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 DAPK3O43293 454 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 ACTN2P35609 894 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 SOX5P35711 763 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 BFSP1Q12934 665 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 ARHGEF16Q5VV41 709 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 HAUS6Q7Z4H7 955 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 RNF10Q8N5U6 811 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 PRPF38AQ8NAV1 312 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 USP38Q8NB14 1042 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 GPR88Q9GZN0 384 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 GREB1LQ9C091 1923 aaPredicted RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 TARSL2A2RTX5 802 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 CYP26A1O43174 497 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 SART1O43290 800 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 SGPL1O95470 568 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 ADRB2P07550 413 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 FAM182AQ5T1J6 154 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 MICALL2Q8IY33 904 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 RPGRIP1Q96KN7 1286 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 ACBD3Q9H3P7 528 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 METTL14Q9HCE5 456 aaKnown RBP18.36■□□□□ 0.53
USP28-208ENST00000540438 FEM1BQ9UK73 627 aa18.36■□□□□ 0.53
USP28-208ENST00000540438 MESDQ14696 234 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 EDEM3Q9BZQ6 932 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 NUCKS1Q9H1E3 243 aaKnown RBP18.35■□□□□ 0.53
USP28-208ENST00000540438 ICAM1P05362 532 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 CIAPIN1Q6FI81 312 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 CHADLQ6NUI6 762 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 SLC47A2Q86VL8 602 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 BSNDQ8WZ55 320 aa18.35■□□□□ 0.53
USP28-208ENST00000540438 KRT35Q92764 455 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms