RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MGRN1O60291 552 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ARHGAP4P98171 946 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 DHX34Q14147 1143 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ZKSCAN8Q15776 578 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 TAOK1Q7L7X3 1001 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 TEX2Q8IWB9 1127 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 CENPTQ96BT3 561 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ZNF317Q96PQ6 595 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 TRPC6Q9Y210 931 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 DIS3Q9Y2L1 958 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RABGAP1Q9Y3P9 1069 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ALG6Q9Y672 507 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RREB1Q92766 1687 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 KIAA1551Q9HCM1 1747 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 SLURP2P0DP57 97 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ZBTB48P10074 688 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 TM4SF1P30408 202 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 CLK2P49760 499 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 JAM2P57087 298 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 POU5F1Q01860 360 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ZNF746Q6NUN9 644 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 EP400NLQ6ZTU2 488 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 SYT2Q8N9I0 419 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 SEC14L1Q92503 715 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 PGM2Q96G03 612 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 STK33Q9BYT3 514 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 MTFR1LQ9H019 292 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 FRMD4BQ9Y2L6 1034 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ASTN1O14525 1302 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 KIAA0391O15091 583 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ACSL3O95573 720 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 AGTP01019 485 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 MMP13P45452 471 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 RPL21P46778 160 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 GTF2IP78347 998 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 GPSM2P81274 684 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 KLRC3Q07444 240 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 CALCOCO2Q13137 446 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 UBAP2Q5T6F2 1119 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 DPY19L2P1Q6NXN4 242 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 TPH2Q8IWU9 490 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ZC3H3Q8IXZ2 948 aaKnown RBP12.15□□□□□ -0.46
SYNE1-237ENST00000539504 NSMCE1Q8WV22 266 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ATP6V0A4Q9HBG4 840 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ZDHHC18Q9NUE0 388 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 SERPINB13Q9UIV8 391 aa12.15□□□□□ -0.46
SYNE1-237ENST00000539504 ASAP2O43150 1006 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 NUDT17P0C025 328 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 KCNJ1P48048 391 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 FMO5P49326 533 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 CCDC137Q6PK04 289 aaKnown RBP12.15□□□□□ -0.47
SYNE1-237ENST00000539504 SLC30A10Q6XR72 485 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 BARGINQ6ZT62 677 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 PALB2Q86YC2 1186 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 SYCP3Q8IZU3 236 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 KIF2BQ8N4N8 673 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 ATXN2LQ8WWM7 1075 aaKnown RBP12.15□□□□□ -0.47
SYNE1-237ENST00000539504 KCNMB3Q9NPA1 279 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 HOMER3Q9NSC5 361 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 DNAJC17Q9NVM6 304 aaKnown RBP12.15□□□□□ -0.47
SYNE1-237ENST00000539504 GGA1Q9UJY5 639 aa12.15□□□□□ -0.47
SYNE1-237ENST00000539504 SLC16A3O15427 465 aaKnown RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 SPOPO43791 374 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 UBOX5O94941 541 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 PAX7P23759 505 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 MARCKSL1P49006 195 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 ADCY1Q08828 1119 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 CTTNQ14247 550 aaKnown RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 ITIH4Q14624 930 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 COG2Q14746 738 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 NUGGCQ68CJ6 796 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 KRT35Q92764 455 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 KLHL29Q96CT2 875 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 FGFR1OP2Q9NVK5 253 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 LAMB1P07942 1786 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 RIMBP2O15034 1052 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 PHF2O75151 1096 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 RPA1P27694 616 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 PDE6CP51160 858 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 LONRF1Q17RB8 773 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 GDAP1Q8TB36 358 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 INTS2Q9H0H0 1204 aaKnown RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 ECT2Q9H8V3 914 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 PARP2Q9UGN5 583 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 MTUS1Q9ULD2 1270 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 SCN7AQ01118 1682 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 MYH14Q7Z406 1995 aaKnown RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 ANKRD62A6NC57 917 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 TCP11X1B4DZS4 312 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 BHMG1C9JSJ3 638 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 EXOC3O60645 756 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 FTLP02792 175 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-237ENST00000539504 CHRNA3P32297 505 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 MYL7Q01449 175 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 ZDHHC24Q6UX98 284 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 CROCCP2Q86T23 111 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 MAGEC3Q8TD91 643 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 EPB41L4BQ9H329 900 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 TTC7AQ9ULT0 858 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms