RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 YME1L1Q96TA2 773 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 ADAM2Q99965 735 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 NT5C3AQ9H0P0 336 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 POLR3FQ9H1D9 316 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-208ENST00000532560 BHMT2Q9H2M3 363 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 DNM3Q9UQ16 869 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 C9IYK1 514 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 CSDE1O75534 798 aaKnown RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 STAG3L1P0CL83 205 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 SRGAP2CP0DJJ0 459 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 CYP11B2P19099 503 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 PHKA2P46019 1235 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 NASPP49321 788 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 GRIN2CQ14957 1233 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 TMEM119Q4V9L6 283 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 SLC24A5Q71RS6 500 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 IFNLR1Q8IU57 520 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 CDX2Q99626 313 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 NFKBIZQ9BYH8 718 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 DAXXQ9UER7 740 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-208ENST00000532560 ADGRA3Q8IWK6 1321 aa16.7■□□□□ 0.26
CPSF1-208ENST00000532560 LINC01553A4QN01 128 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 E9PMD0 336 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 F13A1P00488 732 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 ZSCAN20P17040 1043 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-208ENST00000532560 FGFR4P22455 802 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 GLRA2P23416 452 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 PTENP60484 403 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 GRIN1Q05586 938 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 GRB10Q13322 594 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 CAPSQ13938 189 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 BECN1Q14457 450 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 SLC39A14Q15043 492 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 PCBP1Q15365 356 aaKnown RBP eCLIP16.69■□□□□ 0.26
CPSF1-208ENST00000532560 KCNK18Q7Z418 384 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 CABP7Q86V35 215 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 CDK5RAP3Q96JB5 506 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 PNMA5Q96PV4 448 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 GPRC5CQ9NQ84 441 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 CHST12Q9NRB3 414 aa16.69■□□□□ 0.26
CPSF1-208ENST00000532560 FBXO2Q9UK22 296 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-208ENST00000532560 SRPRBQ9Y5M8 271 aaKnown RBP16.69■□□□□ 0.26
CPSF1-208ENST00000532560 DGKIO75912 1065 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 MARCKSP29966 332 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 UBA7P41226 1012 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 FAM189BP81408 668 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 CEBPZQ03701 1054 aaKnown RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 PKP1Q13835 747 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 ZRSR1Q15695 479 aaKnown RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 FAM102BQ5T8I3 360 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 CATSPER4Q7RTX7 472 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 ZNF689Q96CS4 500 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 ZNF396Q96N95 335 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 TRAIPQ9BWF2 469 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 ELAC1Q9H777 363 aaKnown RBP16.68■□□□□ 0.26
CPSF1-208ENST00000532560 MINDY3Q9H8M7 445 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 AGPAT5Q9NUQ2 364 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 DACT1Q9NYF0 836 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 STXBP5LQ9Y2K9 1186 aa16.68■□□□□ 0.26
CPSF1-208ENST00000532560 ERVK-21P61565 698 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 FOXD4L5Q5VV16 416 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-208ENST00000532560 CDCA2Q69YH5 1023 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-208ENST00000532560 MAEAQ7L5Y9 396 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 FOXD4L4Q8WXT5 416 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-208ENST00000532560 MYLIPQ8WY64 445 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 KIFAP3Q92845 792 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 CALML4Q96GE6 196 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 TGS1Q96RS0 853 aaKnown RBP16.67■□□□□ 0.26
CPSF1-208ENST00000532560 CCSER1Q9C0I3 900 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 CSRNP2Q9H175 543 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 TMEM161AQ9NX61 479 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 LRFN2Q9ULH4 789 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 PIN4Q9Y237 131 aaKnown RBP16.67■□□□□ 0.26
CPSF1-208ENST00000532560 PCDHB7Q9Y5E2 793 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 CHD7Q9P2D1 2997 aa16.67■□□□□ 0.26
CPSF1-208ENST00000532560 YEATS4O95619 227 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 MBTD1Q05BQ5 628 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 PPP2R5AQ15172 486 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 RALGAPA2Q2PPJ7 1873 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 SPRED2Q7Z698 418 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 CMTR2Q8IYT2 770 aaKnown RBP16.66■□□□□ 0.26
CPSF1-208ENST00000532560 KRI1Q8N9T8 703 aaKnown RBP16.66■□□□□ 0.26
CPSF1-208ENST00000532560 LINC00301Q8NCQ3 95 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 RUSC1Q9BVN2 902 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 TIPINQ9BVW5 301 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 PRDM12Q9H4Q4 367 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 KCND2Q9NZV8 630 aa16.66■□□□□ 0.26
CPSF1-208ENST00000532560 COL4A4P53420 1690 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-208ENST00000532560 A0A0U1RQF3 1178 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 EPOPA6NHQ4 379 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 LRRIQ4A6NIV6 560 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 INO80B-WBP1J3KQ70 363 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 ERLIN2O94905 339 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 BRD1O95696 1058 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 PLA2G4BP0C869 781 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 PLCG1P19174 1290 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 GUCY2CP25092 1073 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 AXLP30530 894 aa16.65■□□□□ 0.26
CPSF1-208ENST00000532560 NAMPTP43490 491 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms