RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 INHBBP09529 407 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 MTHFD2P13995 350 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 XPAP23025 273 aaPredicted RBP5.2□□□□□ -1.58
CD44-233ENST00000531141 EPHB4P54760 987 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 NRG3P56975 720 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 MTMR1Q13613 665 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 NFYCQ13952 458 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 MAN2A1Q16706 1144 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 GLB1L2Q8IW92 636 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 GAB3Q8WWW8 586 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 OSBPL6Q9BZF3 934 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 TRIM8Q9BZR9 551 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 JADE2Q9NQC1 790 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 RTEL1Q9NZ71 1219 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 RAPGEFL1Q9UHV5 662 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 DNAI1Q9UI46 699 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 TRHDEQ9UKU6 1024 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 PTPN22Q9Y2R2 807 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 ZDHHC9Q9Y397 364 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 CDY2AQ9Y6F7 541 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 ARHGAP6O43182 974 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 LAMTOR5O43504 91 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 FSBPO95073 299 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 CELA3BP08861 270 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 CNR2P34972 360 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 SCAND1P57086 179 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 EVA1CP58658 441 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 MRPS9P82933 396 aaKnown RBP5.19□□□□□ -1.58
CD44-233ENST00000531141 ITKQ08881 620 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 CT83Q5H943 113 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 ARHGEF18Q6ZSZ5 1173 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 USP30Q70CQ3 517 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 AMOTL1Q8IY63 956 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 ANKRD13AQ8IZ07 590 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 UNC5BQ8IZJ1 945 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 PPP1R14CQ8TAE6 165 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 SLC7A6OSQ96CW6 309 aaPredicted RBP5.19□□□□□ -1.58
CD44-233ENST00000531141 PAWRQ96IZ0 340 aaKnown RBP5.19□□□□□ -1.58
CD44-233ENST00000531141 SEC61A2Q9H9S3 476 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.19□□□□□ -1.58
CD44-233ENST00000531141 PRSS50Q9UI38 385 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 TMPRSS11EQ9UL52 423 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 FAM184BQ9ULE4 1060 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 USP18Q9UMW8 372 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 INVSQ9Y283 1065 aa5.19□□□□□ -1.58
CD44-233ENST00000531141 CTDP1Q9Y5B0 961 aaPredicted RBP5.19□□□□□ -1.58
CD44-233ENST00000531141 TRIM75PA6NK02 468 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 CNOT4O95628 575 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 LPLP06858 475 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 IARSP41252 1262 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 GPR3P46089 330 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 ANTXR2P58335 489 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 KRT85P78386 507 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 EXOSC10Q01780 885 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 TRIM25Q14258 630 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 ABCB5Q2M3G0 1257 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 INAVAQ3KP66 663 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 BRDTQ58F21 947 aaPredicted RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 ZFYVE27Q5T4F4 411 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 LMBR1LQ6UX01 489 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 CLEC14AQ86T13 490 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 FERMT3Q86UX7 667 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 LYSMD2Q8IV50 215 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 SLC41A1Q8IVJ1 513 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 CBARPQ8N350 705 aaPredicted RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 TGFBRAP1Q8WUH2 860 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 AUTS2Q8WXX7 1259 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 SSH1Q8WYL5 1049 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 GCDHQ92947 438 aaPredicted RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 EAF2Q96CJ1 260 aaPredicted RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 ASPSCR1Q9BZE9 553 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 QRSL1Q9H0R6 528 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 ADAM7Q9H2U9 754 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 C14orf93Q9H972 538 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 DDX56Q9NY93 547 aaKnown RBP5.18□□□□□ -1.58
CD44-233ENST00000531141 MAGEL2Q9UJ55 1249 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 NR2E1Q9Y466 385 aa5.18□□□□□ -1.58
CD44-233ENST00000531141 A0A0A6YYK5 440 aaPredicted RBP5.17□□□□□ -1.58
CD44-233ENST00000531141 SHTN1A0MZ66 631 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 GABRDO14764 452 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 MTSS1O43312 755 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 CFBP00751 764 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 LGALS4P56470 323 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 RAC3P60763 192 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 MEF2AQ02078 507 aaPredicted RBP5.17□□□□□ -1.58
CD44-233ENST00000531141 HGFACQ04756 655 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 ADAM15Q13444 863 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 RNF151Q2KHN1 245 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 UBXN11Q5T124 520 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 SLFN13Q68D06 897 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 TTLL10Q6ZVT0 673 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 CMIPQ8IY22 773 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 ZDHHC14Q8IZN3 488 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 CEP89Q96ST8 783 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 FDXACB1Q9BRP7 624 aaPredicted RBP5.17□□□□□ -1.58
CD44-233ENST00000531141 SOX7Q9BT81 388 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 MEGF9Q9H1U4 602 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 PRDM12Q9H4Q4 367 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 DNAJC28Q9NX36 388 aa5.17□□□□□ -1.58
CD44-233ENST00000531141 EVLQ9UI08 416 aaPredicted RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms