RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CCDC42Q96M95 316 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 CEP89Q96ST8 783 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 NIFKQ9BYG3 293 aaKnown RBP22.65■■□□□ 1.22
VPS28-209ENST00000528142 CCL15-CCL14A0A0B4J2E2 113 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 LOC102724159A0A0B4J2E5 919 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 CCDC169A6NNP5 214 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 KIF5CO60282 957 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 TLR2O60603 784 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 ARIH2O95376 493 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 GGPS1O95749 300 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 ACTN1P12814 892 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 PWP2Q15269 919 aaKnown RBP22.64■■□□□ 1.22
VPS28-209ENST00000528142 CCL15Q16663 113 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 MTERF2Q49AM1 385 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 KLHDC7AQ5VTJ3 777 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 HGSNATQ68CP4 663 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 KCNV1Q6PIU1 500 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 GBP6Q6ZN66 633 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 CBWD1Q9BRT8 395 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 KIFC3Q9BVG8 833 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 KMT5AQ9NQR1 393 aa22.64■■□□□ 1.22
VPS28-209ENST00000528142 WDR81Q562E7 1941 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 ZNF263O14978 683 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 ASTE1Q2TB18 679 aaPredicted RBP22.64■■□□□ 1.21
VPS28-209ENST00000528142 WDR78Q5VTH9 848 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 SFMBT2Q5VUG0 894 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 SPRYD7Q5W111 196 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 ANKRD23Q86SG2 305 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 MAP4K3Q8IVH8 894 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 AFAP1L1Q8TED9 768 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 SEPT1Q8WYJ6 367 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 TSC1Q92574 1164 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 HAUS4Q9H6D7 363 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 SIX2Q9NPC8 291 aa22.64■■□□□ 1.21
VPS28-209ENST00000528142 LCA5LO95447 670 aa22.63■■□□□ 1.21
VPS28-209ENST00000528142 EIF4A3P38919 411 aaKnown RBP22.63■■□□□ 1.21
VPS28-209ENST00000528142 MAPK8IP2Q13387 824 aaPredicted RBP22.63■■□□□ 1.21
VPS28-209ENST00000528142 PCIF1Q9H4Z3 704 aa22.63■■□□□ 1.21
VPS28-209ENST00000528142 DHX33Q9H6R0 707 aaKnown RBP22.63■■□□□ 1.21
VPS28-209ENST00000528142 AIPL1Q9NZN9 384 aa22.63■■□□□ 1.21
VPS28-209ENST00000528142 FBXL5Q9UKA1 691 aa22.63■■□□□ 1.21
VPS28-209ENST00000528142 EXOC7Q9UPT5 735 aa22.63■■□□□ 1.21
VPS28-209ENST00000528142 SSU72P8A0A1W2PR75 194 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 DENND3A2RUS2 1198 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 UCHL3P15374 230 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 FMO5P49326 533 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 HUNKP57058 714 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 MCCD1P59942 119 aaPredicted RBP22.62■■□□□ 1.21
VPS28-209ENST00000528142 BFSP1Q12934 665 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 EMC2Q15006 297 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 CCDC62Q6P9F0 684 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 POLR3FQ9H1D9 316 aaPredicted RBP22.62■■□□□ 1.21
VPS28-209ENST00000528142 HSPBP1Q9NZL4 362 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 MYO1AQ9UBC5 1043 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 ADGRA3Q8IWK6 1321 aa22.62■■□□□ 1.21
VPS28-209ENST00000528142 MAPK13O15264 365 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 STAT5BP51692 787 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 CCNA1P78396 465 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 TARBP2Q15633 366 aaKnown RBP22.61■■□□□ 1.21
VPS28-209ENST00000528142 CELF3Q5SZQ8 465 aaKnown RBP22.61■■□□□ 1.21
VPS28-209ENST00000528142 ANKRD13CQ8N6S4 541 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 XXYLT1Q8NBI6 393 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 MLXIPQ9HAP2 919 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 ARID2Q68CP9 1835 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 ANKRD63C9JTQ0 380 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 SERPING1P05155 500 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 ADSSP30520 456 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 TCF7P36402 384 aaPredicted RBP22.61■■□□□ 1.21
VPS28-209ENST00000528142 KIF11P52732 1056 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 CYP27A1Q02318 531 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 ZNF569Q5MCW4 686 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 FAM160B1Q5W0V3 765 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 RDH13Q8NBN7 331 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 GCNT4Q9P109 453 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 MORF4L1Q9UBU8 362 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 TRIM10Q9UDY6 481 aa22.61■■□□□ 1.21
VPS28-209ENST00000528142 ZNF215Q9UL58 517 aaPredicted RBP22.61■■□□□ 1.21
VPS28-209ENST00000528142 RCCD1A6NED2 376 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 URI1O94763 535 aaPredicted RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 IPO7O95373 1038 aaKnown RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 SLU7O95391 586 aaKnown RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 TRIM49P0CI25 452 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 TRIM49CP0CI26 452 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 GCLCP48506 637 aaPredicted RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 POLGP54098 1239 aaPredicted RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 CBWD6Q4V339 395 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 CBWD3Q5JTY5 395 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 CBWD5Q5RIA9 395 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 INTS8Q75QN2 995 aaKnown RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 SAPCD2Q86UD0 394 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 FBXO16Q8IX29 292 aaPredicted RBP22.6■■□□□ 1.21
VPS28-209ENST00000528142 KCNN1Q92952 543 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 GPR20Q99678 358 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 PTPN18Q99952 460 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 NRBP2Q9NSY0 501 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 ARHGAP28Q9P2N2 729 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 MYO6Q9UM54 1294 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 TFR2Q9UP52 801 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 FHOD1Q9Y613 1164 aa22.6■■□□□ 1.21
VPS28-209ENST00000528142 ASB14A6NK59 587 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms