RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CHMP2AO43633 222 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 TDP2O95551 362 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 BCAR1P56945 870 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 LONRF3Q496Y0 759 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 ODR4Q5SWX8 454 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 TMC7Q7Z402 723 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 KSR1Q8IVT5 923 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 SUGP1Q8IWZ8 645 aaKnown RBP16.12■□□□□ 0.17
CPSF1-201ENST00000526271 NRDE2Q9H7Z3 1164 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 C6orf50Q9HD87 102 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 PPP4R2Q9NY27 417 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 CEP131Q9UPN4 1083 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 DOCK6Q96HP0 2047 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 ARID2Q68CP9 1835 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 H0Y858 1186 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 HOXB8P17481 243 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-201ENST00000526271 HSPA4P34932 840 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 FBXL16Q8N461 479 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
CPSF1-201ENST00000526271 CCDC136Q96JN2 1154 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 FAM167AQ96KS9 214 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 MBOAT7Q96N66 472 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 MAP7D2Q96T17 732 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 NIFKQ9BYG3 293 aaKnown RBP16.11■□□□□ 0.17
CPSF1-201ENST00000526271 WRAP73Q9P2S5 460 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-201ENST00000526271 DNAJB4Q9UDY4 337 aa16.11■□□□□ 0.17
CPSF1-201ENST00000526271 NAP1L2Q9ULW6 460 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-201ENST00000526271 A0A087WZ62 844 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 EML1O00423 815 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 HOXA2O43364 376 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 EOMESO95936 686 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 PPM1AP35813 382 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 PHKA2P46019 1235 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 EVCP57679 992 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 SMC1AQ14683 1233 aaKnown RBP16.1■□□□□ 0.17
CPSF1-201ENST00000526271 RARS2Q5T160 578 aaKnown RBP16.1■□□□□ 0.17
CPSF1-201ENST00000526271 ZNF280BQ86YH2 543 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 ETNPPLQ8TBG4 499 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 CASP10Q92851 521 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 JAKMIP1Q96N16 626 aaKnown RBP16.1■□□□□ 0.17
CPSF1-201ENST00000526271 AIFM3Q96NN9 605 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 RIT2Q99578 217 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 FDXACB1Q9BRP7 624 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-201ENST00000526271 TRAIPQ9BWF2 469 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 TBC1D13Q9NVG8 400 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 PUF60Q9UHX1 559 aaKnown RBP16.1■□□□□ 0.17
CPSF1-201ENST00000526271 SAMM50Q9Y512 469 aa16.1■□□□□ 0.17
CPSF1-201ENST00000526271 DTNBO60941 627 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 LILRB3O75022 631 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 OFD1O75665 1012 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 GALTP07902 379 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 ZSCAN20P17040 1043 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-201ENST00000526271 IFNAR1P17181 557 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 RPS6KB1P23443 525 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 PDIA3P30101 505 aaKnown RBP16.09■□□□□ 0.17
CPSF1-201ENST00000526271 TOB2Q14106 344 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-201ENST00000526271 MTERF2Q49AM1 385 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 LRCH2Q5VUJ6 765 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 AGMOQ6ZNB7 445 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 ANO5Q75V66 913 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 ASCL5Q7RTU5 278 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 VPS52Q8N1B4 723 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 TBCKQ8TEA7 893 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 IGSF21Q96ID5 467 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 SLC26A6Q9BXS9 759 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 RNF26Q9BY78 433 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-201ENST00000526271 MINDY3Q9H8M7 445 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 IFT122Q9HBG6 1241 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 TSHZ2Q9NRE2 1034 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 SORCS3Q9UPU3 1222 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 IRAK3Q9Y616 596 aa16.09■□□□□ 0.17
CPSF1-201ENST00000526271 CYP3A7-CYP3A51PA0A087WV96 503 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 FSD2A1L4K1 749 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 GFRA3O60609 400 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 GAS7O60861 476 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 DDHD2O94830 711 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 CXCL14O95715 111 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 CTSAP10619 480 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 CYP3A7P24462 503 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 GNA11P29992 359 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 SLC11A1P49279 550 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 USP11P51784 963 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 CCT2P78371 535 aaKnown RBP16.08■□□□□ 0.16
CPSF1-201ENST00000526271 TBC1D8BQ0IIM8 1120 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 KRT32Q14532 448 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 PTPN14Q15678 1187 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 Q4G0T1 1027 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 UBXN11Q5T124 520 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 PLA2G4FQ68DD2 849 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 CWF19L1Q69YN2 538 aaKnown RBP16.08■□□□□ 0.16
CPSF1-201ENST00000526271 KIAA1841Q6NSI8 718 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 ABI1Q8IZP0 508 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 NLRP7Q8WX94 980 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 NRBP2Q9NSY0 501 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 RNF216Q9NWF9 866 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-201ENST00000526271 LIMD1Q9UGP4 676 aa16.08■□□□□ 0.16
CPSF1-201ENST00000526271 SEPT9Q9UHD8 586 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-201ENST00000526271 EP300Q09472 2414 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 DMXL1Q9Y485 3027 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 DNAH14Q0VDD8 3507 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms