RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	ZFPM1	Q8IX07	1006 aa		6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	DHX37	Q8IY37	1157 aa	Known RBP	6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	BCL6B	Q8N143	479 aa	Predicted RBP	6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	FOXRED1	Q96CU9	486 aa	Predicted RBP	6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	VPS11	Q9H270	941 aa		6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	TYW1	Q9NV66	732 aa	Known RBP	6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	FAM184B	Q9ULE4	1060 aa		6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	TNPO3	Q9Y5L0	923 aa	Known RBP	6.29	□□□□□ -1.4
SREK1-213	ENST00000523655	DENND4B	O75064	1496 aa	Predicted RBP	6.28	□□□□□ -1.4
SREK1-213	ENST00000523655		A0A0G2JNJ9	132 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	ARHGAP6	O43182	974 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	KCNQ2	O43526	872 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	TACR2	P21452	398 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	MECP2	P51608	486 aa	Known RBP	6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	DGCR2	P98153	550 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	C21orf62-AS1	Q17RA5	79 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	ZMAT1	Q5H9K5	638 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	TMEM200B	Q69YZ2	307 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	CRIP3	Q6Q6R5	217 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	CXXC5	Q7LFL8	322 aa	Known RBP	6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	RTN4RL1	Q86UN2	441 aa	Predicted RBP	6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	RTKN2	Q8IZC4	609 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	WDR48	Q8TAF3	677 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	EXTL1	Q92935	676 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	SAMD15	Q9P1V8	674 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655		Q9UFV3	132 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	CPS1	P31327	1500 aa		6.28	□□□□□ -1.4
SREK1-213	ENST00000523655	PLEKHD1	A6NEE1	506 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	PLD2	O14939	933 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	ACO1	P21399	889 aa	Known RBP	6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	SDHA	P31040	664 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	MASP1	P48740	699 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	RGS3	P49796	1198 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	HSP90AB2P	Q58FF8	381 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	ZNF772	Q68DY9	489 aa	Predicted RBP	6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	IGFL4	Q6B9Z1	124 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	GRAMD4	Q6IC98	578 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	C16orf86	Q6ZW13	317 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	USP30	Q70CQ3	517 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	GPR135	Q8IZ08	494 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	TMEM176A	Q96HP8	235 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	SCYL1	Q96KG9	808 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	CDK5RAP1	Q96SZ6	601 aa	Known RBP	6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	FEZ1	Q99689	392 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	AGO3	Q9H9G7	860 aa	Known RBP	6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	ASB1	Q9Y576	335 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	SHANK2	Q9UPX8	1470 aa		6.27	□□□□□ -1.41
SREK1-213	ENST00000523655	FHOD3	Q2V2M9	1422 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	ZFYVE16	Q7Z3T8	1539 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	TRAF5	O00463	557 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	HIP1R	O75146	1068 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	RAD17	O75943	681 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	SLPI	P03973	132 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	COMT	P21964	271 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	KIF11	P52732	1056 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	ANTXR2	P58335	489 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	FOXL1	Q12952	345 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	ADAM15	Q13444	863 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	ZCCHC8	Q6NZY4	707 aa	Known RBP	6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	OTOP1	Q7RTM1	612 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	ZNF808	Q8N4W9	903 aa	Predicted RBP	6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	BOC	Q9BWV1	1114 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	HECA	Q9UBI9	543 aa	Predicted RBP	6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	RIPOR2	Q9Y4F9	1068 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	HS3ST3A1	Q9Y663	406 aa		6.26	□□□□□ -1.41
SREK1-213	ENST00000523655	DISP1	Q96F81	1524 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	CCDC163	A0A0D9SF12	145 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	PTPDC1	A2A3K4	754 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	OPA1	O60313	960 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	S100B	P04271	92 aa	Predicted RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	VIL1	P09327	827 aa	Known RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	PDGFRB	P09619	1106 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	PTX3	P26022	381 aa	Predicted RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	MSX2	P35548	267 aa	Predicted RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	MEOX1	P50221	254 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	SLC6A3	Q01959	620 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	HGFAC	Q04756	655 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	NFYC	Q13952	458 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	PRKD1	Q15139	912 aa	Predicted RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	NRN1L	Q496H8	165 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	USP39	Q53GS9	565 aa	Known RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	TAF7L	Q5H9L4	462 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	OR10A2	Q9H208	303 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	PUF60	Q9UHX1	559 aa	Known RBP	6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	FBXO10	Q9UK96	956 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	TESMIN	Q9Y4I5	508 aa		6.25	□□□□□ -1.41
SREK1-213	ENST00000523655	LOC102724159	A0A0B4J2E5	919 aa		6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	ALDH6A1	Q02252	535 aa	Known RBP	6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	SAFB2	Q14151	953 aa	Known RBP eCLIP	6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	PWP2	Q15269	919 aa	Known RBP	6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	TKFC	Q3LXA3	575 aa		6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	HS1BP3	Q53T59	392 aa		6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	PIK3R6	Q5UE93	754 aa		6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	DDX53	Q86TM3	631 aa	Known RBP	6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	ING1	Q9UK53	422 aa	Predicted RBP	6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	EFCAB5	A4FU69	1503 aa		6.24	□□□□□ -1.41
SREK1-213	ENST00000523655	ATP10A	O60312	1499 aa		6.23	□□□□□ -1.41
SREK1-213	ENST00000523655	NPIPB8	E9PQR5	432 aa		6.23	□□□□□ -1.41
SREK1-213	ENST00000523655	ASMTL	O95671	621 aa		6.23	□□□□□ -1.41
SREK1-213	ENST00000523655	APP	P05067	770 aa		6.23	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms