RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 RGL1Q9NZL6 768 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 TTC28Q96AY4 2481 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 ASAP2O43150 1006 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 IL9P15248 144 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 DNAJB1P25685 340 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 NDUFV1P49821 464 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 CYP4A11Q02928 519 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 KRT17Q04695 432 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 CAMK1Q14012 370 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 CTC1Q2NKJ3 1217 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 PDE12Q6L8Q7 609 aaKnown RBP15.27■□□□□ 0.04
TCOF1-215ENST00000515516 KSR1Q8IVT5 923 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 CCDC83Q8IWF9 413 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 GJD3Q8N144 294 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 TMEM143Q96AN5 459 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 C8orf76Q96K31 380 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 ZNF558Q96NG5 402 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 EIF2AK1Q9BQI3 630 aaKnown RBP15.27■□□□□ 0.04
TCOF1-215ENST00000515516 LLPHQ9BRT6 129 aaKnown RBP15.27■□□□□ 0.04
TCOF1-215ENST00000515516 TLE6Q9H808 572 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 TTC12Q9H892 705 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-215ENST00000515516 TLR9Q9NR96 1032 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 PIN4Q9Y237 131 aaKnown RBP15.27■□□□□ 0.04
TCOF1-215ENST00000515516 COL4A3BPQ9Y5P4 624 aa15.27■□□□□ 0.04
TCOF1-215ENST00000515516 FSD2A1L4K1 749 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 SRGAP2CP0DJJ0 459 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 ATP2B1P20020 1258 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 IRS1P35568 1242 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 PPM1AP35813 382 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 TXKP42681 527 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 NRIP1P48552 1158 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 GUCY1B3Q02153 619 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 GNL2Q13823 731 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 CLUL1Q15846 466 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 RBM23Q86U06 439 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 FAM178BQ8IXR5 827 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 ZNF579Q8NAF0 562 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 FAM184AQ8NB25 1140 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 PRPF31Q8WWY3 499 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 RSPH1Q8WYR4 309 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 MTRQ99707 1265 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 MRPL9Q9BYD2 267 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 DHX33Q9H6R0 707 aaKnown RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 CWH43Q9H720 699 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 SH2B1Q9NRF2 756 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 WRAP73Q9P2S5 460 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-215ENST00000515516 LZTS1Q9Y250 596 aa15.26■□□□□ 0.03
TCOF1-215ENST00000515516 SLITRK3O94933 977 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 GTF2F1P35269 517 aaKnown RBP eCLIP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 PHKA2P46019 1235 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 RAB27AP51159 221 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 HMGN5P82970 282 aaKnown RBP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 PLCB3Q01970 1234 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 SPIRE1Q08AE8 756 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 NCBP1Q09161 790 aaKnown RBP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 LAMTOR4Q0VGL1 99 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 ADAM15Q13444 863 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 BMS1Q14692 1282 aaKnown RBP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 EMC2Q15006 297 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 KCNT2Q6UVM3 1135 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 SRGAP1Q7Z6B7 1085 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 EFHBQ8N7U6 833 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 HELQQ8TDG4 1101 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 MRPS27Q92552 414 aaKnown RBP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 PGBD4Q96DM1 585 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 TRAIPQ9BWF2 469 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 BMP2KQ9NSY1 1161 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-215ENST00000515516 SPG21Q9NZD8 308 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 PRKAG3Q9UGI9 489 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 CD207Q9UJ71 328 aa15.25■□□□□ 0.03
TCOF1-215ENST00000515516 CARNS1A5YM72 827 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 LINC01565O15544 149 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 SRGAP2BP0DMP2 458 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 MCM7P33993 719 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 LTBRP36941 435 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 ALDH7A1P49419 539 aaKnown RBP15.24■□□□□ 0.03
TCOF1-215ENST00000515516 TFDP1Q14186 410 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 MXD4Q14582 209 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-215ENST00000515516 CLLU1OSQ5K130 101 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 GLB1LQ6UWU2 654 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 LRRC55Q6ZSA7 311 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 ADGRD2Q7Z7M1 963 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 ZNF598Q86UK7 904 aaKnown RBP15.24■□□□□ 0.03
TCOF1-215ENST00000515516 CDCA3Q99618 268 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-215ENST00000515516 ENTPD7Q9NQZ7 604 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 ANKEF1Q9NU02 776 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 FAM105AQ9NUU6 356 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 RNF19AQ9NV58 838 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 HCSTQ9UBK5 93 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 RALGAPA2Q2PPJ7 1873 aa15.24■□□□□ 0.03
TCOF1-215ENST00000515516 LYPLA2O95372 231 aa15.23■□□□□ 0.03
TCOF1-215ENST00000515516 RBM25P49756 843 aaKnown RBP15.23■□□□□ 0.03
TCOF1-215ENST00000515516 RNASELQ05823 741 aaKnown RBP15.23■□□□□ 0.03
TCOF1-215ENST00000515516 DLX2Q07687 328 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-215ENST00000515516 ST3GAL1Q11201 340 aa15.23■□□□□ 0.03
TCOF1-215ENST00000515516 SMAD4Q13485 552 aaKnown RBP15.23■□□□□ 0.03
TCOF1-215ENST00000515516 PLPP4Q5VZY2 271 aa15.23■□□□□ 0.03
TCOF1-215ENST00000515516 TMC7Q7Z402 723 aa15.23■□□□□ 0.03
TCOF1-215ENST00000515516 FERMT3Q86UX7 667 aa15.23■□□□□ 0.03
TCOF1-215ENST00000515516 RNF149Q8NC42 400 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms