RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 HDLBPQ00341 1268 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 SLC9A5Q14940 896 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 DAB2IPQ5VWQ8 1189 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 RPAP3Q9H6T3 665 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 PSTPIP2Q9H939 334 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 K7ENM7 598 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KCNQ3O43525 872 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 STAM2O75886 525 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 ACSL3O95573 720 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 HSPA6P17066 643 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PPP2R2AP63151 447 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 RUNX1T1Q06455 604 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 TJAP1Q5JTD0 557 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM102BQ5T8I3 360 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 GRAMD1AQ96CP6 724 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 TLR7Q9NYK1 1049 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 FRMPD2Q68DX3 1309 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 MROH5Q6ZUA9 1318 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 AATKQ6ZMQ8 1374 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 EXOC1LA0A1B0GW35 172 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 LRPAP1P30533 357 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT76Q01546 638 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KIAA1841Q6NSI8 718 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 TRIM50Q86XT4 487 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 SGSM3Q96HU1 749 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PANX2Q96RD6 677 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 MOV10L1Q9BXT6 1211 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 CCDC134Q9H6E4 229 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 BTBD7Q9P203 1132 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 FBXL5Q9UKA1 691 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KIAA1024Q9UPX6 916 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 COL4A3BPQ9Y5P4 624 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 DNALI1O14645 258 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 ACTN1P12814 892 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 CACNB1Q02641 598 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 CTTNQ14247 550 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 MAN2A1Q16706 1144 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 ZCWPW2Q504Y3 356 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 ARMCX5Q6P1M9 558 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 AGGF1Q8N302 714 aaeCLIP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 GLG1Q92896 1179 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 DHTKD1Q96HY7 919 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM129AQ9BZQ8 928 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 ADAMTS1Q9UHI8 967 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 HACL1Q9UJ83 578 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 BLOC1S6Q9UL45 172 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PCDHA13Q9Y5I0 950 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PTPRMP28827 1452 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KIAA0232Q92628 1395 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 LSM1O15116 133 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 KIF11P52732 1056 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 YARSP54577 528 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 GTF2IP78347 998 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 LRRC24Q50LG9 513 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 CCT7Q99832 543 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 SLC52A2Q9HAB3 445 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 USP40Q9NVE5 1235 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PSD3Q9NYI0 1048 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 CD163L1Q9NR16 1453 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 PLEKHG1Q9ULL1 1385 aa9.29□□□□□ -0.92
LIMCH1-218ENST00000513024 NEXMIFQ5QGS0 1516 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RSPH10B2B2RC85 870 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 TAF4O00268 1085 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 PPP1R37O75864 691 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 MMP10P09238 476 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RSPH10BP0C881 870 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 FOSL2P15408 326 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 VCPP55072 806 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 OCRLQ01968 901 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 CNGA2Q16280 664 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 BTBD6Q96KE9 485 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 AIFM3Q96NN9 605 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 BSDC1Q9NW68 430 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 SOX13Q9UN79 622 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 KLHL20Q9Y2M5 609 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 LEMD3Q9Y2U8 911 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 IPO5O00410 1097 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 AP1G2O75843 785 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 COPB2P35606 906 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 FKBP3Q00688 224 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RESTQ13127 1097 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RAB44Q7Z6P3 723 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 DNAJC10Q8IXB1 793 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 FOXP1Q9H334 677 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 CDV3Q9UKY7 258 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 SFI1A8K8P3 1242 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 GFPT2O94808 682 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 PAX7P23759 505 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 MAPK4P31152 587 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 NUP107P57740 925 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 ZNF658Q5TYW1 1059 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 DEPTORQ8TB45 409 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 DTX3LQ8TDB6 740 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 LARP4BQ92615 738 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 ADPGKQ9BRR6 497 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 KLC2Q9H0B6 622 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 MLXIPLQ9NP71 852 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 SFMBT1Q9UHJ3 866 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms