RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	POF1B	Q8WVV4	589 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	TCP11	Q8WWU5	503 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	TBC1D32	Q96NH3	1257 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	NECAB3	Q96P71	396 aa	Predicted RBP	11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	LXN	Q9BS40	222 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	MRPL9	Q9BYD2	267 aa	Known RBP	11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	GJB4	Q9NTQ9	266 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	VAV3	Q9UKW4	847 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	PCDHA12	Q9UN75	941 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	LIMCH1	Q9UPQ0	1083 aa		11.66	□□□□□ -0.54
NR1I3-222	ENST00000506018	BDP1	A6H8Y1	2624 aa		11.65	□□□□□ -0.54
NR1I3-222	ENST00000506018		A0A087WZ62	844 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018		A0A0U1RQF3	1178 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	EML1	O00423	815 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	ASAP2	O43150	1006 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	NEMF	O60524	1076 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	SRGAP2B	P0DMP2	458 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	FGFR1	P11362	822 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	FDPS	P14324	419 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	YWHAB	P31946	246 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	SSTR3	P32745	418 aa	Predicted RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	GATM	P50440	423 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	RAB27A	P51159	221 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	KRT17	Q04695	432 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	NR5A1	Q13285	461 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	GNL2	Q13823	731 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	BMS1	Q14692	1282 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	PLA2G4F	Q68DD2	849 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	TWF2	Q6IBS0	349 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	ANO5	Q75V66	913 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	CATSPER4	Q7RTX7	472 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	ECHDC2	Q86YB7	292 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	COLGALT1	Q8NBJ5	622 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	PSPC1	Q8WXF1	523 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	ZNF668	Q96K58	619 aa	Predicted RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	NLRP4	Q96MN2	994 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	LLPH	Q9BRT6	129 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	IGFLR1	Q9H665	355 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	TLR9	Q9NR96	1032 aa		11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	TYW1	Q9NV66	732 aa	Known RBP	11.65	□□□□□ -0.55
NR1I3-222	ENST00000506018	TMEM150B	A6NC51	233 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	GRXCR2	A6NFK2	248 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	BTBD18	B2RXH4	712 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018		H3BQ06	376 aa	Predicted RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	FGF18	O76093	207 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	STBD1	O95210	358 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	LARGE1	O95461	756 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	NDUFV1	P49821	464 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	HMGN5	P82970	282 aa	Known RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	NCBP1	Q09161	790 aa	Known RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	HYAL1	Q12794	435 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	COL19A1	Q14993	1142 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	XKR9	Q5GH70	373 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	SRGAP1	Q7Z6B7	1085 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	TPH2	Q8IWU9	490 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	FAM184A	Q8NB25	1140 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	HAS1	Q92839	578 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	C8orf76	Q96K31	380 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	ZNF558	Q96NG5	402 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	POP1	Q99575	1024 aa	Known RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	SH2D3A	Q9BRG2	576 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	PRKAG3	Q9UGI9	489 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	PIN4	Q9Y237	131 aa	Known RBP	11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	LZTS1	Q9Y250	596 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	COL4A3BP	Q9Y5P4	624 aa		11.64	□□□□□ -0.55
NR1I3-222	ENST00000506018	MUC3A	Q02505	3323 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	JAK2	O60674	1132 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	IL9	P15248	144 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	FGFR4	P22455	802 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	FOSB	P53539	338 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	CYP4A11	Q02928	519 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	DRP2	Q13474	957 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	TFDP1	Q14186	410 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	MXD4	Q14582	209 aa	Predicted RBP	11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	CCDC83	Q8IWF9	413 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	FAM178B	Q8IXR5	827 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	GJD3	Q8N144	294 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	TNFRSF25	Q93038	417 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	PGBD4	Q96DM1	585 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	DYDC2	Q96IM9	177 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	CEP89	Q96ST8	783 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	CDCA3	Q99618	268 aa	Predicted RBP	11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	MTR	Q99707	1265 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	TRAIP	Q9BWF2	469 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	DHX33	Q9H6R0	707 aa	Known RBP	11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	TLE6	Q9H808	572 aa		11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	TTC12	Q9H892	705 aa	Predicted RBP	11.63	□□□□□ -0.55
NR1I3-222	ENST00000506018	ANP32A	P39687	249 aa	Known RBP	11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	TXK	P42681	527 aa		11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	PHKA2	P46019	1235 aa		11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	NRIP1	P48552	1158 aa		11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	ALDH7A1	P49419	539 aa	Known RBP	11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	NPEPPS	P55786	919 aa		11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	PLCB3	Q01970	1234 aa		11.62	□□□□□ -0.55
NR1I3-222	ENST00000506018	ORC2	Q13416	577 aa	Predicted RBP	11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms