RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	IL23A	Q9NPF7	189 aa		5.23	□□□□□ -1.57
CBX3-208	ENST00000497498	POLR3B	Q9NW08	1133 aa	Predicted RBP	5.23	□□□□□ -1.57
CBX3-208	ENST00000497498	GOLGA8B	A8MQT2	603 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	PPP1R12A	O14974	1030 aa	Predicted RBP	5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	RFPL3	O75679	317 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	TOX4	O94842	621 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	ADH4	P08319	380 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	VSIG10L2	P0DP72	767 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	SDS	P20132	328 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	FLT3	P36888	993 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	SLC25A3	Q00325	362 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	ADCY1	Q08828	1119 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	ESRP1	Q6NXG1	681 aa	Known RBP	5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	UBE2R2	Q712K3	238 aa	Predicted RBP	5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	RPGR	Q92834	1020 aa	Known RBP	5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	ELF4	Q99607	663 aa	Predicted RBP	5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	TCF25	Q9BQ70	676 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	C11orf21	Q9P2W6	132 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498	SPO11	Q9Y5K1	396 aa		5.22	□□□□□ -1.57
CBX3-208	ENST00000497498		A0A0A6YYJ9	748 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	JUN	P05412	331 aa	Known RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	JMJD7	P0C870	316 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	SLC9A1	P19634	815 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	MAN2A2	P49641	1150 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	RABGGTB	P53611	331 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	CNGB1	Q14028	1251 aa	Predicted RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	TOB2	Q14106	344 aa	Predicted RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	BMS1	Q14692	1282 aa	Known RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	ELAVL1	Q15717	326 aa	Known RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	SMN1	Q16637	294 aa	Known RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	CDCA2	Q69YH5	1023 aa	Predicted RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	ZNF662	Q6ZS27	426 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	HTR3D	Q70Z44	454 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	GSPT2	Q8IYD1	628 aa	Known RBP	5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	ULK2	Q8IYT8	1036 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	KANSL2	Q9H9L4	492 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	SLC2A4RG	Q9NR83	387 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	TMEM260	Q9NX78	707 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	DNAI1	Q9UI46	699 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498	XDH	P47989	1333 aa		5.21	□□□□□ -1.58
CBX3-208	ENST00000497498		A0A087X1B8	175 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	INHBE	P58166	350 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	ADCY2	Q08462	1091 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	FKBP15	Q5T1M5	1219 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	MFSD5	Q6N075	450 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	PCSK4	Q6UW60	755 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498		Q6ZPA2	131 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	ZNF627	Q7L945	461 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	PHYKPL	Q8IUZ5	450 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	SH3TC2	Q8TF17	1288 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	SREK1	Q8WXA9	508 aa	Known RBP	5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	CLIP3	Q96DZ5	547 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	OSBPL6	Q9BZF3	934 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	MTG2	Q9H4K7	406 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	C14orf93	Q9H972	538 aa	Known RBP	5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	INTS7	Q9NVH2	962 aa	Known RBP	5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	OXSM	Q9NWU1	459 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	GPRC5B	Q9NZH0	403 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	MAGEC2	Q9UBF1	373 aa	Predicted RBP	5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	SYNPO2	Q9UMS6	1093 aa		5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	REXO2	Q9Y3B8	237 aa	Known RBP	5.2	□□□□□ -1.58
CBX3-208	ENST00000497498	KLRG2	A4D1S0	409 aa	Predicted RBP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	MAFG	O15525	162 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	DAPK3	O43293	454 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	MTSS1	O43312	755 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	PRPF6	O94906	941 aa	Known RBP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	KRT4	P19013	534 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	KIR2DL3	P43628	341 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	SMAD3	P84022	425 aa	Known RBP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	PABPC4	Q13310	644 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	CFAP100	Q494V2	611 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	KIAA1841	Q6NSI8	718 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	TIGD7	Q6NT04	549 aa	Predicted RBP	5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	KIF18B	Q86Y91	864 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	ZZZ3	Q8IYH5	903 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	CMTM4	Q8IZR5	234 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	SYNPO	Q8N3V7	929 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	C7orf31	Q8N865	590 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	MRFAP1L1	Q96HT8	127 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	PRRX2	Q99811	253 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	MYL10	Q9BUA6	226 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	GPR87	Q9BY21	358 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498	RCAN3	Q9UKA8	241 aa		5.19	□□□□□ -1.58
CBX3-208	ENST00000497498		A0A0A6YYK5	440 aa	Predicted RBP	5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	OPHN1	O60890	802 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	ASMTL	O95671	621 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	ATP2A2	P16615	1042 aa	Known RBP	5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	MAN2A1	Q16706	1144 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	C1QL3	Q5VWW1	255 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	KRT40	Q6A162	431 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	UNQ6494/PRO21346	Q6UXR6	183 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	MRGPRG	Q86SM5	289 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	MDGA1	Q8NFP4	955 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	PPP1R14C	Q8TAE6	165 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	ZNF512	Q96ME7	567 aa	Predicted RBP	5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	MNT	Q99583	582 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	SOX7	Q9BT81	388 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	ZMAT4	Q9H898	229 aa		5.18	□□□□□ -1.58
CBX3-208	ENST00000497498	F2	P00734	622 aa		5.17	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms