RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 RGL1Q9NZL6 768 aa15.43■□□□□ 0.06
SPTLC1-207ENST00000488921 WRAP73Q9P2S5 460 aaPredicted RBP15.43■□□□□ 0.06
SPTLC1-207ENST00000488921 PLAGL2Q9UPG8 496 aa15.43■□□□□ 0.06
SPTLC1-207ENST00000488921 KIF3AQ9Y496 699 aa15.43■□□□□ 0.06
SPTLC1-207ENST00000488921 COL4A3BPQ9Y5P4 624 aa15.43■□□□□ 0.06
SPTLC1-207ENST00000488921 A0A0U1RQF3 1178 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 EOMESO95936 686 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 ITGB1P05556 798 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 SKIP12755 728 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 LAG3P18627 525 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 KCNA5P22460 613 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 TXKP42681 527 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 UBE3AQ05086 875 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 CTTNQ14247 550 aaKnown RBP15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 EMC2Q15006 297 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 PUS10Q3MIT2 529 aaKnown RBP15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 LEXMQ3ZCV2 418 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 XKR9Q5GH70 373 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 ECHDC2Q86YB7 292 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 TPH2Q8IWU9 490 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 LRRC43Q8N309 656 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 KLHL23Q8NBE8 558 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 FBXO18Q8NFZ0 1043 aa15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 ALG13Q9NP73 1137 aaKnown RBP15.42■□□□□ 0.06
SPTLC1-207ENST00000488921 ASAP2O43150 1006 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 SLITRK3O94933 977 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 LYPLA2O95372 231 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 FGFR1P11362 822 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 FGFR4P22455 802 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 MCM7P33993 719 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 RAB27AP51159 221 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 COL19A1Q14993 1142 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 TWF2Q6IBS0 349 aaKnown RBP15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 CATSPER4Q7RTX7 472 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 MTMR9Q96QG7 549 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 MTRQ99707 1265 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 TRAIPQ9BWF2 469 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 MRPL9Q9BYD2 267 aaKnown RBP15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 ANKEF1Q9NU02 776 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 NOL7Q9UMY1 257 aaKnown RBP15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 PIN4Q9Y237 131 aaKnown RBP15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 FAM50BQ9Y247 325 aa15.41■□□□□ 0.06
SPTLC1-207ENST00000488921 FSD2A1L4K1 749 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 WNT7AO00755 349 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 CSDE1O75534 798 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 DGAT1O75907 488 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 ATP2B1P20020 1258 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 PPM1AP35813 382 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 TRAPPC10P48553 1259 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 MXD4Q14582 209 aaPredicted RBP15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 SRGAP1Q7Z6B7 1085 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 NOSTRINQ8IVI9 506 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 KSR1Q8IVT5 923 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 THNSL1Q8IYQ7 743 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 COLGALT1Q8NBJ5 622 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 RNF169Q8NCN4 708 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 SPPL3Q8TCT6 385 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 POF1BQ8WVV4 589 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 PRPF31Q8WWY3 499 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 HSD17B14Q9BPX1 270 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 IFT122Q9HBG6 1241 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 TYW1Q9NV66 732 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 CLDND1Q9NY35 253 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 TTC28Q96AY4 2481 aa15.4■□□□□ 0.06
SPTLC1-207ENST00000488921 CARNS1A5YM72 827 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 POTEMA6NI47 508 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 FGF18O76093 207 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 CSPG5O95196 566 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 PHKA2P46019 1235 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 LAMTOR4Q0VGL1 99 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 HYAL1Q12794 435 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 PCBP1Q15365 356 aaKnown RBP eCLIP15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 EP400NLQ6ZTU2 488 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 ZNF598Q86UK7 904 aaKnown RBP15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 FERMT3Q86UX7 667 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 ZNF579Q8NAF0 562 aaKnown RBP15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 ERMNQ8TAM6 284 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 TMEM143Q96AN5 459 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 CASD1Q96PB1 797 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 CWH43Q9H720 699 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 TUFT1Q9NNX1 390 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 BMP2KQ9NSY1 1161 aaPredicted RBP15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 AGPAT5Q9NUQ2 364 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 RNF19AQ9NV58 838 aa15.39■□□□□ 0.05
SPTLC1-207ENST00000488921 MYO7AQ13402 2215 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 OR52Z1P0C646 297 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 SRGAP2CP0DJJ0 459 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 XRCC6P12956 609 aaKnown RBP eCLIP15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 CAMK1Q14012 370 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 TFDP1Q14186 410 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 CLLU1OSQ5K130 101 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 TTC38Q5R3I4 469 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 PTCRAQ6ISU1 281 aaPredicted RBP15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 PDE12Q6L8Q7 609 aaKnown RBP15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 RNF149Q8NC42 400 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 ZNF558Q96NG5 402 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 NECAB3Q96P71 396 aaPredicted RBP15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 TMEM60Q9H2L4 133 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 TLR9Q9NR96 1032 aa15.38■□□□□ 0.05
SPTLC1-207ENST00000488921 FAM105AQ9NUU6 356 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms