RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 EPHA7Q15375 998 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 TMEM31Q5JXX7 168 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 PDE12Q6L8Q7 609 aaKnown RBP25.32■■□□□ 1.64
PTPN4-211ENST00000488279 LRRC55Q6ZSA7 311 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 SLFN12Q8IYM2 578 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 LRRC43Q8N309 656 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 SLC7A3Q8WY07 619 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 CEP170P1Q96L14 293 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 PUF60Q9UHX1 559 aaKnown RBP25.32■■□□□ 1.64
PTPN4-211ENST00000488279 PPME1Q9Y570 386 aa25.32■■□□□ 1.64
PTPN4-211ENST00000488279 MBTPS2O43462 519 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 PLCB3Q01970 1234 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 ZP2Q05996 745 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 SMAD4Q13485 552 aaKnown RBP25.31■■□□□ 1.64
PTPN4-211ENST00000488279 SMAD2Q15796 467 aaKnown RBP25.31■■□□□ 1.64
PTPN4-211ENST00000488279 POTEDQ86YR6 584 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 ADHFE1Q8IWW8 467 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 LZTS1Q9Y250 596 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 PCDHGC5Q9Y5F6 944 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 WDR81Q562E7 1941 aa25.31■■□□□ 1.64
PTPN4-211ENST00000488279 LARGE1O95461 756 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 NPEPPSP55786 919 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 ERVFC1P60507 584 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 CLLU1OSQ5K130 101 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 NCAPH2Q6IBW4 605 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 KCNT2Q6UVM3 1135 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 OTUD6AQ7L8S5 288 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 ZNF598Q86UK7 904 aaKnown RBP25.3■■□□□ 1.64
PTPN4-211ENST00000488279 KSR1Q8IVT5 923 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 C4orf19Q8IY42 314 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 NSUN7Q8NE18 718 aaKnown RBP25.3■■□□□ 1.64
PTPN4-211ENST00000488279 NLRP4Q96MN2 994 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 ZNF558Q96NG5 402 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 LRFN3Q9BTN0 628 aa25.3■■□□□ 1.64
PTPN4-211ENST00000488279 FAM205CA6NFA0 338 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 GPR37L1O60883 481 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 SKIP12755 728 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 ALADP13716 330 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 YWHABP31946 246 aaKnown RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 POLGP54098 1239 aaPredicted RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 KRT17Q04695 432 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 TRIM29Q14134 588 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 TWF2Q6IBS0 349 aaKnown RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 MRPS27Q92552 414 aaKnown RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 TNFRSF25Q93038 417 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 MSLNLQ96KJ4 702 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 LXNQ9BS40 222 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 TRAIPQ9BWF2 469 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 ZSWIM4Q9H7M6 989 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 RGL1Q9NZL6 768 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 CLEC1BQ9P126 229 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 WRAP73Q9P2S5 460 aaPredicted RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 RAPGEFL1Q9UHV5 662 aa25.29■■□□□ 1.64
PTPN4-211ENST00000488279 FNDC1Q4ZHG4 1894 aaPredicted RBP25.29■■□□□ 1.64
PTPN4-211ENST00000488279 FSD2A1L4K1 749 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 C19orf67A6NJJ6 358 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 PER2O15055 1255 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 PPM1AP35813 382 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 RFC5P40937 340 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 PHKA2P46019 1235 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 CATSPER4Q7RTX7 472 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 ZNF579Q8NAF0 562 aaKnown RBP25.28■■□□□ 1.64
PTPN4-211ENST00000488279 HELQQ8TDG4 1101 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 POP1Q99575 1024 aaKnown RBP25.28■■□□□ 1.64
PTPN4-211ENST00000488279 CDCA3Q99618 268 aaPredicted RBP25.28■■□□□ 1.64
PTPN4-211ENST00000488279 DHX33Q9H6R0 707 aaKnown RBP25.28■■□□□ 1.64
PTPN4-211ENST00000488279 SPG21Q9NZD8 308 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 PIN4Q9Y237 131 aaKnown RBP25.28■■□□□ 1.64
PTPN4-211ENST00000488279 COL4A3BPQ9Y5P4 624 aa25.28■■□□□ 1.64
PTPN4-211ENST00000488279 BTBD18B2RXH4 712 aa25.27■■□□□ 1.64
PTPN4-211ENST00000488279 EYA4O95677 639 aa25.27■■□□□ 1.64
PTPN4-211ENST00000488279 ATF7P17544 494 aaPredicted RBP25.27■■□□□ 1.64
PTPN4-211ENST00000488279 PRPF31Q8WWY3 499 aaKnown RBP25.27■■□□□ 1.64
PTPN4-211ENST00000488279 PSPC1Q8WXF1 523 aaKnown RBP25.27■■□□□ 1.64
PTPN4-211ENST00000488279 DYDC2Q96IM9 177 aa25.27■■□□□ 1.64
PTPN4-211ENST00000488279 MRPL9Q9BYD2 267 aaKnown RBP25.27■■□□□ 1.64
PTPN4-211ENST00000488279 PCDHA12Q9UN75 941 aa25.27■■□□□ 1.64
PTPN4-211ENST00000488279 KIAA1671Q9BY89 1806 aa25.27■■□□□ 1.64
PTPN4-211ENST00000488279 FSCN2O14926 492 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 JAK2O60674 1132 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 SEC24BO95487 1268 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 SRGAP2CP0DJJ0 459 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 SPIRE1Q08AE8 756 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 COASYQ13057 564 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 CTTNQ14247 550 aaKnown RBP25.26■■□□□ 1.63
PTPN4-211ENST00000488279 CALCRLQ16602 461 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 TPH2Q8IWU9 490 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 RSPH1Q8WYR4 309 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 TMEM143Q96AN5 459 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 TCF25Q9BQ70 676 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 IFT122Q9HBG6 1241 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 NGRNQ9NPE2 291 aaKnown RBP25.26■■□□□ 1.63
PTPN4-211ENST00000488279 ENTPD7Q9NQZ7 604 aa25.26■■□□□ 1.63
PTPN4-211ENST00000488279 ATG2AQ2TAZ0 1938 aa25.25■■□□□ 1.63
PTPN4-211ENST00000488279 GAS2O43903 313 aaKnown RBP25.25■■□□□ 1.63
PTPN4-211ENST00000488279 SLITRK3O94933 977 aa25.25■■□□□ 1.63
PTPN4-211ENST00000488279 PBX3P40426 434 aa25.25■■□□□ 1.63
PTPN4-211ENST00000488279 ALDH7A1P49419 539 aaKnown RBP25.25■■□□□ 1.63
PTPN4-211ENST00000488279 CYP4A11Q02928 519 aa25.25■■□□□ 1.63
PTPN4-211ENST00000488279 DUSP6Q16828 381 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms