RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 NUDCD1Q96RS6 583 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 GORASP1Q9BQQ3 440 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 MYLK2Q9H1R3 596 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 MTRF1LQ9UGC7 380 aaKnown RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 RASAL2Q9UJF2 1139 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 HDAC9Q9UKV0 1011 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 INTUQ9ULD6 942 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 DIS3Q9Y2L1 958 aaKnown RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 PCDHA3Q9Y5H8 950 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 H0Y3Z8 333 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 ACADSP16219 412 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 GNAQP50148 359 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 FXR2P51116 673 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 POLE2P56282 527 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 CCDC15Q0P6D6 951 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 OR52E8Q6IFG1 317 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 RPUSD2Q8IZ73 545 aaKnown RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 PHC3Q8NDX5 983 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 TTC8Q8TAM2 541 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 DNAJC9Q8WXX5 260 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 NAP1L3Q99457 506 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 ROPN1BQ9BZX4 212 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 LRRC27Q9C0I9 530 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 CARD9Q9H257 536 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 LRMDAQ9H2I8 198 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 KCTD10Q9H3F6 313 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 ROPN1Q9HAT0 212 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-208ENST00000486641 TMEM260Q9NX78 707 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 HAO1Q9UJM8 370 aa11.48□□□□□ -0.57
CCDC171-208ENST00000486641 ANKRD36CQ5JPF3 1778 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ANKRD63C9JTQ0 380 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 SLC37A4O43826 429 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TARSP26639 723 aaKnown RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 HOXA7P31268 230 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 CACNB1Q02641 598 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 CHRNDQ07001 517 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 NKX1-1Q15270 411 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 EXOC3L4Q17RC7 722 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TTC27Q6P3X3 843 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 GJB7Q6PEY0 223 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 APBB1IPQ7Z5R6 666 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 CCDC25Q86WR0 208 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 DGKHQ86XP1 1220 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ENDOVQ8N8Q3 282 aaKnown RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 B4GALNT2Q8NHY0 566 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 LNX1Q8TBB1 728 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 UCMAQ8WVF2 138 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 SCFD1Q8WVM8 642 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ALG3Q92685 438 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 DDX17Q92841 729 aaKnown RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TRIM4Q9C037 500 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TXLNGQ9NUQ3 528 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 PCMTD2Q9NV79 361 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TMOD4Q9NZQ9 345 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ARMCX3Q9UH62 379 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ASAP1Q9ULH1 1129 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 PCDHA2Q9Y5H9 948 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 PFASO15067 1338 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 IGSF9BQ9UPX0 1349 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 BCL9O00512 1426 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ATP8B3O60423 1300 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 PHF2O75151 1096 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 COL1A1P02452 1464 aaPredicted RBP11.47□□□□□ -0.57
CCDC171-208ENST00000486641 VCAM1P19320 739 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ACVR2BQ13705 512 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 MTFR1Q15390 333 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 TMEM119Q4V9L6 283 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 FOXB2Q5VYV0 432 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 KRT79Q5XKE5 535 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 VPS36Q86VN1 386 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 ZDHHC14Q8IZN3 488 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 PRELID2Q8N945 189 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 KIFAP3Q92845 792 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 FAM136AQ96C01 138 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 C6orf50Q9HD87 102 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 CTNNAL1Q9UBT7 734 aa11.47□□□□□ -0.57
CCDC171-208ENST00000486641 NPHP3-ACAD11A0A0J9YXS1 232 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 USP17L3A6NCW0 530 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 USP17L4A6NCW7 530 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 PODXLO00592 558 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 STARD3NLO95772 234 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 BAG3O95817 575 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 ABCB4P21439 1286 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 JAM2P57087 298 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 TMEM266Q2M3C6 531 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 TSNAXIP1Q2TAA8 658 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 USP17L1Q7RTZ2 530 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 ARHGAP22Q7Z5H3 698 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 VSIG1Q86XK7 387 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 ZC3H3Q8IXZ2 948 aaKnown RBP11.46□□□□□ -0.57
CCDC171-208ENST00000486641 AGGF1Q8N302 714 aaeCLIP11.46□□□□□ -0.57
CCDC171-208ENST00000486641 RBBP8NLQ8NC74 664 aaPredicted RBP11.46□□□□□ -0.57
CCDC171-208ENST00000486641 SLC30A5Q8TAD4 765 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 ART4Q93070 314 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 EMILIN3Q9NT22 766 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.46□□□□□ -0.57
CCDC171-208ENST00000486641 PARP2Q9UGN5 583 aa11.46□□□□□ -0.57
CCDC171-208ENST00000486641 KIF13BQ9NQT8 1826 aa11.46□□□□□ -0.58
CCDC171-208ENST00000486641 PALM3A6NDB9 673 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms