RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PPARAQ07869 468 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 RBL2Q08999 1139 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 DHX8Q14562 1220 aaKnown RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 TIGD5Q53EQ6 642 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 SYDE2Q5VT97 1194 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 BTNL9Q6UXG8 535 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 TMCO2Q7Z6W1 182 aaPredicted RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 FILIP1Q7Z7B0 1213 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 SYT9Q86SS6 491 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 SIRT2Q8IXJ6 389 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 LSM14AQ8ND56 463 aaKnown RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 NEK9Q8TD19 979 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 PPP1R13LQ8WUF5 828 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 MRPL38Q96DV4 380 aaKnown RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 SNX27Q96L92 541 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 MFSD14AQ96MC6 490 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 SLC30A3Q99726 388 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 RANBP17Q9H2T7 1088 aaKnown RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 ZHX3Q9H4I2 956 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 PIF1Q9H611 641 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 BRD7Q9NPI1 651 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 DDX56Q9NY93 547 aaKnown RBP7.81□□□□□ -1.16
HDAC3-209ENST00000486618 MICAL3Q7RTP6 2002 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 GNB5O14775 395 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 TIMM44O43615 452 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 NCK2O43639 380 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 GH1P01241 217 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 AMHP03971 560 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 CKBP12277 381 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 EDNRBP24530 442 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 PEX19P40855 299 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 RPS6P62753 249 aaKnown RBP7.8□□□□□ -1.16
HDAC3-209ENST00000486618 GPNMBQ14956 572 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 MAPRE1Q15691 268 aaKnown RBP7.8□□□□□ -1.16
HDAC3-209ENST00000486618 GDF6Q6KF10 455 aaPredicted RBP7.8□□□□□ -1.16
HDAC3-209ENST00000486618 FAM117BQ6P1L5 589 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 EP400NLQ6ZTU2 488 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 C7orf31Q8N865 590 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 COPS5Q92905 334 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 PABPC5Q96DU9 382 aaKnown RBP7.8□□□□□ -1.16
HDAC3-209ENST00000486618 MYCBPQ99417 103 aaPredicted RBP7.8□□□□□ -1.16
HDAC3-209ENST00000486618 MDFIQ99750 246 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 KATNAL1Q9BW62 490 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 SUV39H2Q9H5I1 410 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 ZBTB40Q9NUA8 1239 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 GTF2IRD1Q9UHL9 959 aa7.8□□□□□ -1.16
HDAC3-209ENST00000486618 EMSYQ7Z589 1322 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 PTPRZ1P23471 2315 aaPredicted RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 H3BQ06 376 aaPredicted RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 M0R2C6 588 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 RANBP6O60518 1105 aaKnown RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 NBNO60934 754 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 MMP3P08254 477 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 SLC16A2P36021 539 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 ZP2Q05996 745 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 SPEM2Q0P670 501 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 GPM6BQ13491 265 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 BMS1Q14692 1282 aaKnown RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 DGKDQ16760 1214 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 TTBK2Q6IQ55 1244 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 SLC30A10Q6XR72 485 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 ADHFE1Q8IWW8 467 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 PAF1Q8N7H5 531 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 AFG1LQ8WV93 481 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 CLEC4DQ8WXI8 215 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 POP1Q99575 1024 aaKnown RBP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 PRRX2Q99811 253 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 C17orf80Q9BSJ5 609 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 IL17RBQ9NRM6 502 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.79□□□□□ -1.16
HDAC3-209ENST00000486618 XIRP2A4UGR9 3374 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 ZDBF2Q9HCK1 2354 aa7.79□□□□□ -1.16
HDAC3-209ENST00000486618 WDR19Q8NEZ3 1342 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 MYH7BA7E2Y1 1941 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ELOA3CA0A087WX78 387 aaPredicted RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 KRBA1A5PL33 1030 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ELOA3DA6NLF2 546 aaPredicted RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 H3BNC9 293 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 NMT2O60551 498 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 SIN3BO75182 1162 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 TOP1P11387 765 aaKnown RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 HTRA4P83105 476 aaPredicted RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 PKN1Q16512 942 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 RTN1Q16799 776 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ELOA3BQ3SY89 546 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 EPC2Q52LR7 807 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ZNF746Q6NUN9 644 aaPredicted RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 CCDC62Q6P9F0 684 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 SEPT14Q6ZU15 432 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 CHST3Q7LGC8 479 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 BTLAQ7Z6A9 289 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 RAB44Q7Z6P3 723 aaPredicted RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 MYOCDQ8IZQ8 938 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ELOA3Q8NG57 546 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ENOX1Q8TC92 643 aaKnown RBP7.78□□□□□ -1.16
HDAC3-209ENST00000486618 KAT2BQ92831 832 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 CTAGE1Q96RT6 745 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 ALG1Q9BT22 464 aa7.78□□□□□ -1.16
HDAC3-209ENST00000486618 NSUN3Q9H649 340 aaKnown RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms