RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CELF4Q9BZC1 486 aaKnown RBP8.95□□□□□ -0.98
USP40-216ENST00000485943 WNT8AQ9H1J5 351 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 CYP26B1Q9NR63 512 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 RGL1Q9NZL6 768 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 PCDH10Q9P2E7 1040 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 CCDC39Q9UFE4 941 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 DNM3Q9UQ16 869 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 TELO2Q9Y4R8 837 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 PCDHB6Q9Y5E3 794 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 LOXHD1Q8IVV2 1947 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 IGKV6D-21A0A0A0MT36 114 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 USO1O60763 962 aaKnown RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 DGAT1O75907 488 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 LIG1P18858 919 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 PRPHP41219 470 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 NLRP11P59045 1033 aaKnown RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 UGCGQ16739 394 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 KIZQ2M2Z5 673 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 PUS10Q3MIT2 529 aaKnown RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 FAM102BQ5T8I3 360 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 MAEAQ7L5Y9 396 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 ZBTB8OSQ8IWT0 167 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 DBF4BQ8NFT6 615 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 HERVK_113Q902F9 699 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 HAS1Q92839 578 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 GAS2L1Q99501 681 aaPredicted RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 OSMRQ99650 979 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 SH2D3AQ9BRG2 576 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 TRIM6Q9C030 488 aaPredicted RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 SUCLA2Q9P2R7 463 aaPredicted RBP8.94□□□□□ -0.98
USP40-216ENST00000485943 VAV3Q9UKW4 847 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 CFAP45Q9UL16 551 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 SLC27A5Q9Y2P5 690 aa8.94□□□□□ -0.98
USP40-216ENST00000485943 MBLAC1A4D2B0 266 aaPredicted RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 EML1O00423 815 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 C22orf31O95567 290 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 SRGAP2CP0DJJ0 459 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 PHKA2P46019 1235 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 CRYBB1P53674 252 aaPredicted RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 NPEPPSP55786 919 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 SMAD3P84022 425 aaKnown RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 PDIA5Q14554 519 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 MXD4Q14582 209 aaPredicted RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 EMC2Q15006 297 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 PPP2R5AQ15172 486 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 LRIT3Q3SXY7 679 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 ARL6IP4Q66PJ3 421 aaKnown RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 CATSPER4Q7RTX7 472 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 HACE1Q8IYU2 909 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 RNF169Q8NCN4 708 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 MCPH1Q8NEM0 835 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 ANKK1Q8NFD2 765 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 PHOSPHO2Q8TCD6 241 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 PIGOQ8TEQ8 1089 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 DHX38Q92620 1227 aaKnown RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 TIFAQ96CG3 184 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 ZNF668Q96K58 619 aaPredicted RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 FAM161BQ96MY7 647 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 NIFKQ9BYG3 293 aaKnown RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 TMEM60Q9H2L4 133 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 ANKEF1Q9NU02 776 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 DDX19AQ9NUU7 478 aaKnown RBP8.93□□□□□ -0.98
USP40-216ENST00000485943 DACT1Q9NYF0 836 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 KIAA1024Q9UPX6 916 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 PCDHB7Q9Y5E2 793 aa8.93□□□□□ -0.98
USP40-216ENST00000485943 GOLGA6L4A6NEF3 574 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 LRRIQ4A6NIV6 560 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 INO80B-WBP1J3KQ70 363 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 ASAP2O43150 1006 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 ZNF862O60290 1169 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 NBNO60934 754 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 MUTP22033 750 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 RPA1P27694 616 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 CD52P31358 61 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 MATR3P43243 847 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP40-216ENST00000485943 RBL2Q08999 1139 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 DHX8Q14562 1220 aaKnown RBP8.92□□□□□ -0.98
USP40-216ENST00000485943 TWF2Q6IBS0 349 aaKnown RBP8.92□□□□□ -0.98
USP40-216ENST00000485943 APBB1IPQ7Z5R6 666 aaPredicted RBP8.92□□□□□ -0.98
USP40-216ENST00000485943 RPAINQ86UA6 219 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 CABP7Q86V35 215 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 ZNF410Q86VK4 478 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 DEFB123Q8N688 67 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 DEPTORQ8TB45 409 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 LRRN4Q8WUT4 740 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 ZBTB10Q96DT7 871 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 CCDC34Q96HJ3 373 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 AK8Q96MA6 479 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 MTMR9Q96QG7 549 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 POLR3CQ9BUI4 534 aaPredicted RBP8.92□□□□□ -0.98
USP40-216ENST00000485943 ZHX3Q9H4I2 956 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.92□□□□□ -0.98
USP40-216ENST00000485943 PLSCR2Q9NRY7 297 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 COL4A3BPQ9Y5P4 624 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 SQORQ9Y6N5 450 aa8.92□□□□□ -0.98
USP40-216ENST00000485943 TRIOBPQ9H2D6 2365 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 TMEM150BA6NC51 233 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 TBCAO75347 108 aaKnown RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 MAFO75444 373 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 SLITRK3O94933 977 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms