RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	MTM1	Q13496	603 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	ZFYVE27	Q5T4F4	411 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	FBXO25	Q8TCJ0	367 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	EPS8L3	Q8TE67	593 aa	Known RBP	11.64	□□□□□ -0.55
LSS-208	ENST00000474319	LRRC45	Q96CN5	670 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	DYDC2	Q96IM9	177 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	FMO2	Q99518	471 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	2e-8	■□□□□ 10.2
LSS-208	ENST00000474319	RABGAP1	Q9Y3P9	1069 aa		11.64	□□□□□ -0.55
LSS-208	ENST00000474319	DOCK2	Q92608	1830 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	HMGB1P1	B2RPK0	211 aa	Predicted RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SHMT1	P34896	483 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	GCLM	P48507	274 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SKOR1	P84550	965 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SP4	Q02446	784 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	DACT2	Q5SW24	774 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	TAB3	Q8N5C8	712 aa	Predicted RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	GDAP1	Q8TB36	358 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	PWWP2A	Q96N64	755 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SLC40A1	Q9NP59	571 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	THSD7A	Q9UPZ6	1657 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	ASTN2	O75129	1339 aa	Predicted RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	TCRBV7S2A1N4T	A0A589	114 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SLC12A3	P55017	1021 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	PPP2R2A	P63151	447 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	DR1	Q01658	176 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	GLE1	Q53GS7	698 aa	Known RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	CACNA2D3	Q8IZS8	1091 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	SEC16B	Q96JE7	1060 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	TACO1	Q9BSH4	297 aa	Known RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	KCNK9	Q9NPC2	374 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	HOMER2	Q9NSB8	354 aa		11.63	□□□□□ -0.55
LSS-208	ENST00000474319	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.63	□□□□□ -0.55
LSS-208	ENST00000474319	FAM107A	O95990	144 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CXCL9	Q07325	125 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	ODR4	Q5SWX8	454 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	HIBCH	Q6NVY1	386 aa	Predicted RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CCDC26	Q8TAB7	109 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	ALG3	Q92685	438 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	SLC35C1	Q96A29	364 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CEP63	Q96MT8	703 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	UBE2T	Q9NPD8	197 aa	Predicted RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	KLC4	Q9NSK0	619 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	PCDHA2	Q9Y5H9	948 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CALU	O43852	315 aa	Predicted RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	DLG4	P78352	724 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	SLC29A2	Q14542	456 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	STRIP1	Q5VSL9	837 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	STYK1	Q6J9G0	422 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	ERMN	Q8TAM6	284 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	OSBPL7	Q9BZF2	842 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	SEMA4A	Q9H3S1	761 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319		A0A1B0GUL6	1792 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CHN1	P15882	459 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	ICA1	Q05084	483 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	DGKZ	Q13574	1117 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CCDC105	Q8IYK2	499 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	CPXCR1	Q8N123	301 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	KIF2B	Q8N4N8	673 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	GIMAP7	Q8NHV1	300 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	SLC30A5	Q8TAD4	765 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	PRMT1	Q99873	361 aa	Known RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	NUCKS1	Q9H1E3	243 aa	Known RBP	11.62	□□□□□ -0.55
LSS-208	ENST00000474319	AIPL1	Q9NZN9	384 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	STK38L	Q9Y2H1	464 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	USP20	Q9Y2K6	914 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	DAAM1	Q9Y4D1	1078 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	KDM3A	Q9Y4C1	1321 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	LRP5	O75197	1615 aa		11.62	□□□□□ -0.55
LSS-208	ENST00000474319	FOXN3	O00409	490 aa	Predicted RBP	11.61	□□□□□ -0.55
LSS-208	ENST00000474319	MSH4	O15457	936 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	GNA14	O95837	355 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	MME	P08473	750 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	SPATA31C1	P0DKV0	1188 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	HMGB2	P26583	209 aa	Known RBP	11.61	□□□□□ -0.55
LSS-208	ENST00000474319	HSPA9	P38646	679 aa	Known RBP	11.61	□□□□□ -0.55
LSS-208	ENST00000474319	PPP1R18	Q6NYC8	613 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	TMC3	Q7Z5M5	1100 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	PRUNE1	Q86TP1	453 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	NT5DC3	Q86UY8	548 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	CREB1	P16220	341 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	DCAF12L1	Q5VU92	463 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	LLGL2	Q6P1M3	1020 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	FAM178B	Q8IXR5	827 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	LRRC57	Q8N9N7	239 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	C1orf54	Q8WWF1	131 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	ASTN1	O14525	1302 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319		F5H6K3	240 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	RGS16	O15492	202 aa	Predicted RBP	11.61	□□□□□ -0.55
LSS-208	ENST00000474319	SPOP	O43791	374 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	KLRC3	Q07444	240 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	EPHA7	Q15375	998 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	IFI16	Q16666	785 aa	Known RBP	11.61	□□□□□ -0.55
LSS-208	ENST00000474319	LONRF1	Q17RB8	773 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	DENND2C	Q68D51	928 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	PPP4R3A	Q6IN85	833 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	ARFGAP2	Q8N6H7	521 aa		11.61	□□□□□ -0.55
LSS-208	ENST00000474319	COG5	Q9UP83	839 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms