RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 SPDL1Q96EA4 605 aa21.32■■□□□ 1
SDF4-205ENST00000465727 ZNF570Q96NI8 536 aa21.32■■□□□ 1
SDF4-205ENST00000465727 MTFR1LQ9H019 292 aa21.32■■□□□ 1
SDF4-205ENST00000465727 AJAP1Q9UKB5 411 aaPredicted RBP21.32■■□□□ 1
SDF4-205ENST00000465727 SMIM23A6NLE4 172 aa21.31■■□□□ 1
SDF4-205ENST00000465727 IGF2BP3O00425 579 aaKnown RBP eCLIP21.31■■□□□ 1
SDF4-205ENST00000465727 KRT13P13646 458 aa21.31■■□□□ 1
SDF4-205ENST00000465727 SKIV2L2P42285 1042 aaKnown RBP21.31■■□□□ 1
SDF4-205ENST00000465727 TCERG1LQ5VWI1 586 aa21.31■■□□□ 1
SDF4-205ENST00000465727 MAPKAPK5Q8IW41 473 aa21.31■■□□□ 1
SDF4-205ENST00000465727 KIRREL3Q8IZU9 778 aa21.31■■□□□ 1
SDF4-205ENST00000465727 EPS8L3Q8TE67 593 aaKnown RBP21.31■■□□□ 1
SDF4-205ENST00000465727 SLC24A3Q9HC58 644 aa21.31■■□□□ 1
SDF4-205ENST00000465727 SLC5A4Q9NY91 659 aa21.31■■□□□ 1
SDF4-205ENST00000465727 SAP30BPQ9UHR5 308 aaKnown RBP21.31■■□□□ 1
SDF4-205ENST00000465727 ARL2BPQ9Y2Y0 163 aa21.31■■□□□ 1
SDF4-205ENST00000465727 C10orf71Q711Q0 1435 aa21.3■■□□□ 1
SDF4-205ENST00000465727 IRS2Q9Y4H2 1338 aa21.3■■□□□ 1
SDF4-205ENST00000465727 LOC102724428A0A0B4J2F2 783 aa21.3■■□□□ 1
SDF4-205ENST00000465727 PNMA6FA0A0J9YX94 578 aa21.3■■□□□ 1
SDF4-205ENST00000465727 GJB6O95452 261 aa21.3■■□□□ 1
SDF4-205ENST00000465727 GCKP35557 465 aa21.3■■□□□ 1
SDF4-205ENST00000465727 IFNAR2P48551 515 aa21.3■■□□□ 1
SDF4-205ENST00000465727 CASP5P51878 434 aa21.3■■□□□ 1
SDF4-205ENST00000465727 SIK1P57059 783 aa21.3■■□□□ 1
SDF4-205ENST00000465727 LACTBP83111 547 aaPredicted RBP21.3■■□□□ 1
SDF4-205ENST00000465727 GLYCTKQ8IVS8 523 aa21.3■■□□□ 1
SDF4-205ENST00000465727 RHOT2Q8IXI1 618 aa21.3■■□□□ 1
SDF4-205ENST00000465727 DYDC1Q8WWB3 177 aa21.3■■□□□ 1
SDF4-205ENST00000465727 SYT11Q9BT88 431 aa21.3■■□□□ 1
SDF4-205ENST00000465727 STK33Q9BYT3 514 aa21.3■■□□□ 1
SDF4-205ENST00000465727 ZHX3Q9H4I2 956 aa21.3■■□□□ 1
SDF4-205ENST00000465727 CORO1CQ9ULV4 474 aaPredicted RBP21.3■■□□□ 1
SDF4-205ENST00000465727 PLIN4Q96Q06 1357 aa21.3■■□□□ 1
SDF4-205ENST00000465727 SMNDC1O75940 238 aaKnown RBP eCLIP21.3■■□□□ 12e-6■■■□□ 17.2
SDF4-205ENST00000465727 WFS1O76024 890 aa21.3■■□□□ 1
SDF4-205ENST00000465727 NR3C1P04150 777 aa21.3■■□□□ 1
SDF4-205ENST00000465727 RPL21P46778 160 aaKnown RBP21.3■■□□□ 1
SDF4-205ENST00000465727 ATP11AP98196 1134 aa21.3■■□□□ 1
SDF4-205ENST00000465727 MKRN3Q13064 507 aaKnown RBP21.3■■□□□ 1
SDF4-205ENST00000465727 MKRN4PQ13434 485 aaPredicted RBP21.3■■□□□ 1
SDF4-205ENST00000465727 CDCA2Q69YH5 1023 aaPredicted RBP21.3■■□□□ 1
SDF4-205ENST00000465727 NAIF1Q69YI7 327 aaPredicted RBP21.3■■□□□ 1
SDF4-205ENST00000465727 CHADLQ6NUI6 762 aa21.3■■□□□ 1
SDF4-205ENST00000465727 RXFP1Q9HBX9 757 aa21.3■■□□□ 1
SDF4-205ENST00000465727 CD2APQ9Y5K6 639 aa21.3■■□□□ 1
SDF4-205ENST00000465727 ANKRD62A6NC57 917 aa21.29■■□□□ 1
SDF4-205ENST00000465727 DIAPH2O60879 1101 aa21.29■■□□□ 1
SDF4-205ENST00000465727 SNHG28P0DPA3 235 aa21.29■■□□□ 1
SDF4-205ENST00000465727 CTNNA2P26232 953 aa21.29■■□□□ 1
SDF4-205ENST00000465727 MSH2P43246 934 aa21.29■■□□□ 1
SDF4-205ENST00000465727 MAP2K1Q02750 393 aaPredicted RBP21.29■■□□□ 1
SDF4-205ENST00000465727 GIT2Q14161 759 aa21.29■■□□□ 1
SDF4-205ENST00000465727 CAPRIN2Q6IMN6 1127 aaKnown RBP21.29■■□□□ 1
SDF4-205ENST00000465727 C11orf63Q6NUN7 778 aa21.29■■□□□ 1
SDF4-205ENST00000465727 BARGINQ6ZT62 677 aa21.29■■□□□ 1
SDF4-205ENST00000465727 TRMT10CQ7L0Y3 403 aaKnown RBP21.29■■□□□ 1
SDF4-205ENST00000465727 ASRGL1Q7L266 308 aa21.29■■□□□ 1
SDF4-205ENST00000465727 CYFIP1Q7L576 1253 aa21.29■■□□□ 1
SDF4-205ENST00000465727 UBL4BQ8N7F7 174 aa21.29■■□□□ 1
SDF4-205ENST00000465727 BTG4Q9NY30 223 aa21.29■■□□□ 1
SDF4-205ENST00000465727 JAG2Q9Y219 1238 aa21.29■■□□□ 1
SDF4-205ENST00000465727 RGL2O15211 777 aa21.28■■□□□ 1
SDF4-205ENST00000465727 ATP2A2P16615 1042 aaKnown RBP21.28■■□□□ 1
SDF4-205ENST00000465727 UBE2SQ16763 222 aa21.28■■□□□ 1
SDF4-205ENST00000465727 MEX3CQ5U5Q3 659 aaKnown RBP21.28■■□□□ 1
SDF4-205ENST00000465727 SLFN12Q8IYM2 578 aa21.28■■□□□ 1
SDF4-205ENST00000465727 C18orf8Q96DM3 657 aa21.28■■□□□ 1
SDF4-205ENST00000465727 PCDHA3Q9Y5H8 950 aa21.28■■□□□ 1
SDF4-205ENST00000465727 WNK3Q9BYP7 1800 aa21.28■■□□□ 1
SDF4-205ENST00000465727 PFASO15067 1338 aa21.28■■□□□ 1
SDF4-205ENST00000465727 FRMPD2Q68DX3 1309 aaPredicted RBP21.28■■□□□ 1
SDF4-205ENST00000465727 IGSF9BQ9UPX0 1349 aa21.28■■□□□ 1
SDF4-205ENST00000465727 ALAS1P13196 640 aa21.28■■□□□ 1
SDF4-205ENST00000465727 HOXD13P35453 343 aa21.28■■□□□ 1
SDF4-205ENST00000465727 COPB2P35606 906 aa21.28■■□□□ 1
SDF4-205ENST00000465727 CCNHP51946 323 aaPredicted RBP21.28■■□□□ 1
SDF4-205ENST00000465727 KCTD19Q17RG1 926 aaPredicted RBP21.28■■□□□ 1
SDF4-205ENST00000465727 POTEAQ6S8J7 498 aa21.28■■□□□ 1
SDF4-205ENST00000465727 ADAT2Q7Z6V5 191 aaKnown RBP21.28■■□□□ 1
SDF4-205ENST00000465727 EXOC3L1Q86VI1 746 aa21.28■■□□□ 1
SDF4-205ENST00000465727 ALG3Q92685 438 aa21.28■■□□□ 1
SDF4-205ENST00000465727 ART4Q93070 314 aa21.28■■□□□ 1
SDF4-205ENST00000465727 SERPINB12Q96P63 405 aa21.28■■□□□ 1
SDF4-205ENST00000465727 TRIM7Q9C029 511 aa21.28■■□□□ 1
SDF4-205ENST00000465727 CCDC113Q9H0I3 377 aa21.28■■□□□ 1
SDF4-205ENST00000465727 GLT8D2Q9H1C3 349 aa21.28■■□□□ 1
SDF4-205ENST00000465727 SPATS2LQ9NUQ6 558 aaKnown RBP21.28■■□□□ 1
SDF4-205ENST00000465727 ASTN1O14525 1302 aa21.27■■□□□ 1
SDF4-205ENST00000465727 ITPK1Q13572 414 aa21.27■■□□□ 1
SDF4-205ENST00000465727 TCEAL1Q15170 157 aa21.27■■□□□ 1
SDF4-205ENST00000465727 DIXDC1Q155Q3 683 aa21.27■■□□□ 1
SDF4-205ENST00000465727 SPATA21Q7Z572 469 aa21.27■■□□□ 1
SDF4-205ENST00000465727 TXNRD3Q86VQ6 643 aa21.27■■□□□ 1
SDF4-205ENST00000465727 SFR1Q86XK3 245 aa21.27■■□□□ 1
SDF4-205ENST00000465727 SAAL1Q96ER3 474 aa21.27■■□□□ 1
SDF4-205ENST00000465727 FGFR1OP2Q9NVK5 253 aa21.27■■□□□ 1
SDF4-205ENST00000465727 STK24Q9Y6E0 443 aa21.27■■□□□ 1
SDF4-205ENST00000465727 TCP11X1B4DZS4 312 aa21.27■□□□□ 0.99
SDF4-205ENST00000465727 KRT16P08779 473 aa21.27■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms