RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MTRQ99707 1265 aa14.53□□□□□ -0.08
COL28A1-206ENST00000465339 ADAM2Q99965 735 aa14.53□□□□□ -0.08
COL28A1-206ENST00000465339 MFRPQ9BY79 579 aa14.53□□□□□ -0.08
COL28A1-206ENST00000465339 RGS18Q9NS28 235 aa14.53□□□□□ -0.08
COL28A1-206ENST00000465339 DBR1Q9UK59 544 aaKnown RBP14.53□□□□□ -0.08
COL28A1-206ENST00000465339 COL4A3BPQ9Y5P4 624 aa14.53□□□□□ -0.08
COL28A1-206ENST00000465339 A0A087WZ62 844 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 LCHNA4D1U4 455 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 LINC01553A4QN01 128 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 BMP15O95972 392 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 FOSL2P15408 326 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 ZSCAN20P17040 1043 aaPredicted RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 SYT1P21579 422 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 CCT6AP40227 531 aaKnown RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 RARRES1P49788 294 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 MXD4Q14582 209 aaPredicted RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 ARL6IP4Q66PJ3 421 aaKnown RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 SLC24A5Q71RS6 500 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 LINC01599Q8WXQ3 324 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 TMEM143Q96AN5 459 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 ZNF668Q96K58 619 aaPredicted RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 SAMD11Q96NU1 681 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 TGS1Q96RS0 853 aaKnown RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 FDXACB1Q9BRP7 624 aaPredicted RBP14.52□□□□□ -0.09
COL28A1-206ENST00000465339 CHST12Q9NRB3 414 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 COL4A6Q14031 1691 aa14.52□□□□□ -0.09
COL28A1-206ENST00000465339 DGKIO75912 1065 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 PDIA4P13667 645 aaKnown RBP14.51□□□□□ -0.09
COL28A1-206ENST00000465339 SFPQP23246 707 aaKnown RBP eCLIP14.51□□□□□ -0.09
COL28A1-206ENST00000465339 SARSP49591 514 aaKnown RBP14.51□□□□□ -0.09
COL28A1-206ENST00000465339 ERVK-21P61565 698 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 FAM189BP81408 668 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 LAMTOR4Q0VGL1 99 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 DSC3Q14574 896 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 KRT79Q5XKE5 535 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 FERMT3Q86UX7 667 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 KSR1Q8IVT5 923 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 ARNTL2Q8WYA1 636 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 ZNF689Q96CS4 500 aaPredicted RBP14.51□□□□□ -0.09
COL28A1-206ENST00000465339 NLRP4Q96MN2 994 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 ATP6V0A4Q9HBG4 840 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 LRFN2Q9ULH4 789 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 PCDHB7Q9Y5E2 793 aa14.51□□□□□ -0.09
COL28A1-206ENST00000465339 NLRC5Q86WI3 1866 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 A0A087WWV3 80 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 C9IYK1 514 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 MGEA5O60502 916 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 ARHGEF15O94989 841 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 SRGAP2CP0DJJ0 459 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 POU3F3P20264 500 aaPredicted RBP14.5□□□□□ -0.09
COL28A1-206ENST00000465339 POU5F1BQ06416 359 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 IL17AQ16552 155 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 POTEGQ6S5H5 508 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 MAMSTRQ6ZN01 415 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 SRGAP1Q7Z6B7 1085 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 FIBCD1Q8N539 461 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 KCTD17Q8N5Z5 321 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 MCPH1Q8NEM0 835 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 FBXO22Q8NEZ5 403 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 SNX29Q8TEQ0 813 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 ELAC1Q9H777 363 aaKnown RBP14.5□□□□□ -0.09
COL28A1-206ENST00000465339 CERS4Q9HA82 394 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 IFT122Q9HBG6 1241 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 XPNPEP1Q9NQW7 623 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 DACT1Q9NYF0 836 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 KIAA1024Q9UPX6 916 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 RALGAPA2Q2PPJ7 1873 aa14.5□□□□□ -0.09
COL28A1-206ENST00000465339 HSP90AA1P07900 732 aaKnown RBP14.49□□□□□ -0.09
COL28A1-206ENST00000465339 ARL2P36404 184 aa14.49□□□□□ -0.09
COL28A1-206ENST00000465339 TFDP1Q14186 410 aa14.49□□□□□ -0.09
COL28A1-206ENST00000465339 PCBP1Q15365 356 aaKnown RBP eCLIP14.49□□□□□ -0.09
COL28A1-206ENST00000465339 MAFAQ8NHW3 353 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-206ENST00000465339 ZSCAN16Q9H4T2 348 aaPredicted RBP14.49□□□□□ -0.09
COL28A1-206ENST00000465339 RC3H2Q9HBD1 1191 aaKnown RBP14.49□□□□□ -0.09
COL28A1-206ENST00000465339 TMEM161AQ9NX61 479 aa14.49□□□□□ -0.09
COL28A1-206ENST00000465339 TRANK1O15050 2925 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 ADGRA3Q8IWK6 1321 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 ARHGEF35A5YM69 484 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 VWA3AA6NCI4 1184 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 STX6O43752 255 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 USO1O60763 962 aaKnown RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 CSDE1O75534 798 aaKnown RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 FGFR4P22455 802 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 IGFBP4P22692 258 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 PHKA2P46019 1235 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 BTG3Q14201 252 aaPredicted RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 ADGRE1Q14246 886 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 PADI6Q6TGC4 694 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 CATSPER4Q7RTX7 472 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 CMTR2Q8IYT2 770 aaKnown RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 RNF149Q8NC42 400 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 AK8Q96MA6 479 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 TRAIPQ9BWF2 469 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 DDX19AQ9NUU7 478 aaKnown RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 LMCD1Q9NZU5 365 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 DNM3Q9UQ16 869 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 MTMR6Q9Y217 621 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 RWDD3Q9Y3V2 267 aa14.48□□□□□ -0.09
COL28A1-206ENST00000465339 FNDC1Q4ZHG4 1894 aaPredicted RBP14.48□□□□□ -0.09
COL28A1-206ENST00000465339 A0A0U1RQF3 1178 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms