RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 UTP14CQ5TAP6 766 aaKnown RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 CNKSR3Q6P9H4 555 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 SERINC5Q86VE9 423 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 ADSSL1Q8N142 457 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 AOPEPQ8N6M6 819 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 CYP2W1Q8TAV3 490 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 NOC3LQ8WTT2 800 aaKnown RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 ATP6V0A1Q93050 837 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 TRIM44Q96DX7 344 aaPredicted RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 EIF2AK1Q9BQI3 630 aaKnown RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 AGO4Q9HCK5 861 aaKnown RBP13.06□□□□□ -0.32
USP54-209ENST00000464635 PKD2L1Q9P0L9 805 aa13.06□□□□□ -0.32
USP54-209ENST00000464635 C17orf102A2RUQ5 167 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 LCHNA4D1U4 455 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 DKC1O60832 514 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP54-209ENST00000464635 EYA4O95677 639 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 P4HBP07237 508 aaKnown RBP13.05□□□□□ -0.32
USP54-209ENST00000464635 THPOP40225 353 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 ZNF75DP51815 510 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 JAK3P52333 1124 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 SLC12A3P55017 1021 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 KRT76Q01546 638 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 TAP1Q03518 808 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 SPAG1Q07617 926 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 MTMR1Q13613 665 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 KMT5BQ4FZB7 885 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 ZNF746Q6NUN9 644 aaPredicted RBP13.05□□□□□ -0.32
USP54-209ENST00000464635 GRAMD1CQ8IYS0 662 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 PHOSPHO2Q8TCD6 241 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 LRRC15Q8TF66 581 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 DNAJC19Q96DA6 116 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 NACC1Q96RE7 527 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 TRIM5Q9C035 493 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 RNPEPQ9H4A4 650 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 IMPACTQ9P2X3 320 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 KIAA1024Q9UPX6 916 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 NLRC5Q86WI3 1866 aa13.05□□□□□ -0.32
USP54-209ENST00000464635 PRRC2BQ5JSZ5 2229 aaKnown RBP13.05□□□□□ -0.32
USP54-209ENST00000464635 BICDL2A1A5D9 508 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 MYMKA6NI61 221 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 MED24O75448 989 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 SLITRK3O94933 977 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 CTSHP09668 335 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 PLA2G4BP0C869 781 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 ARP10275 920 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 KCNJ6P48051 423 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 MCM6Q14566 821 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 ECM1Q16610 540 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 SMAP1Q8IYB5 467 aaPredicted RBP13.04□□□□□ -0.32
USP54-209ENST00000464635 MICALL1Q8N3F8 863 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 GUF1Q8N442 669 aaKnown RBP13.04□□□□□ -0.32
USP54-209ENST00000464635 DDX12PQ92771 950 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 TIPINQ9BVW5 301 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 HSD3B7Q9H2F3 369 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 EXOC1Q9NV70 894 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 SETD4Q9NVD3 440 aa13.04□□□□□ -0.32
USP54-209ENST00000464635 DBR1Q9UK59 544 aaKnown RBP13.04□□□□□ -0.32
USP54-209ENST00000464635 WDR81Q562E7 1941 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 VCANP13611 3396 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 GSTTP1A0A1W2PQM5 241 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 PSMA7O14818 248 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 AP5Z1O43299 807 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 TLL1O43897 1013 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 LGR5O75473 907 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 PARNO95453 639 aaKnown RBP13.03□□□□□ -0.32
USP54-209ENST00000464635 TCF7P36402 384 aaPredicted RBP13.03□□□□□ -0.32
USP54-209ENST00000464635 ASIC1P78348 528 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 PAK1Q13153 545 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 MKRN4PQ13434 485 aaPredicted RBP13.03□□□□□ -0.32
USP54-209ENST00000464635 NCAPH2Q6IBW4 605 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP54-209ENST00000464635 CCDC65Q8IXS2 484 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 C4orf19Q8IY42 314 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 DBF4BQ8NFT6 615 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 LMBR1Q8WVP7 490 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 BLZF1Q9H2G9 400 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 ZSWIM4Q9H7M6 989 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 SEL1LQ9UBV2 794 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 NFE2L3Q9Y4A8 694 aa13.03□□□□□ -0.32
USP54-209ENST00000464635 ATG2AQ2TAZ0 1938 aa13.02□□□□□ -0.32
USP54-209ENST00000464635 TCF20Q9UGU0 1960 aaKnown RBP13.02□□□□□ -0.32
USP54-209ENST00000464635 RSPH10B2B2RC85 870 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 EML1O00423 815 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 FGFR1OPO95684 399 aaKnown RBP13.02□□□□□ -0.33
USP54-209ENST00000464635 RSPH10BP0C881 870 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 CYP11B2P19099 503 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 CCNE1P24864 410 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 MARK3P27448 753 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 PRCPP42785 496 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 ADAM17P78536 824 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 CDKAL1Q5VV42 579 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 CENPPQ6IPU0 288 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 FAM117BQ6P1L5 589 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 RUFY4Q6ZNE9 571 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 KCNK18Q7Z418 384 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 ARNTL2Q8WYA1 636 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 TCEAL9Q9UHQ7 104 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 ZNF215Q9UL58 517 aaPredicted RBP13.02□□□□□ -0.33
USP54-209ENST00000464635 ODF2LQ9ULJ1 636 aa13.02□□□□□ -0.33
USP54-209ENST00000464635 ABHD14A-ACY1A0A1B0GW23 586 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms