RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 C17orf75Q9HAS0 396 aa21.93■■□□□ 1.1
COL9A3-204ENST00000463487 CDHR5Q9HBB8 845 aa21.93■■□□□ 1.1
COL9A3-204ENST00000463487 RNF216Q9NWF9 866 aaPredicted RBP21.93■■□□□ 1.1
COL9A3-204ENST00000463487 LRRIQ4A6NIV6 560 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 AMHP03971 560 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 NAMPTP43490 491 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 NCBP1Q09161 790 aaKnown RBP21.92■■□□□ 1.1
COL9A3-204ENST00000463487 DHX8Q14562 1220 aaKnown RBP21.92■■□□□ 1.1
COL9A3-204ENST00000463487 RESP18Q5W5W9 173 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 C1orf186Q6ZWK4 172 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 SV2BQ7L1I2 683 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 GPBP1Q86WP2 473 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 KSR1Q8IVT5 923 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 ZBTB8OSQ8IWT0 167 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 PDILTQ8N807 584 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 IQUBQ8NA54 791 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 TMEM40Q8WWA1 233 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 ZNF668Q96K58 619 aaPredicted RBP21.92■■□□□ 1.1
COL9A3-204ENST00000463487 SLC9A7Q96T83 725 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 NFKBIZQ9BYH8 718 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 LRRC27Q9C0I9 530 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 C2orf40Q9H1Z8 148 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 AGO3Q9H9G7 860 aaKnown RBP21.92■■□□□ 1.1
COL9A3-204ENST00000463487 GPRC5CQ9NQ84 441 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 BLOC1S4Q9NUP1 217 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 ODF2LQ9ULJ1 636 aa21.92■■□□□ 1.1
COL9A3-204ENST00000463487 NOC2LQ9Y3T9 749 aaKnown RBP21.92■■□□□ 1.1
COL9A3-204ENST00000463487 PHLPP2Q6ZVD8 1323 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 TCHHQ07283 1943 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 ZSCAN20P17040 1043 aaPredicted RBP21.91■■□□□ 1.1
COL9A3-204ENST00000463487 GLRA2P23416 452 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 CMA1P23946 247 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 DMP1Q13316 513 aaPredicted RBP21.91■■□□□ 1.1
COL9A3-204ENST00000463487 CAPSQ13938 189 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 MCM6Q14566 821 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 FAM228AQ86W67 206 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 DEPTORQ8TB45 409 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 PHOSPHO2Q8TCD6 241 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 ASAP3Q8TDY4 903 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 VWCEQ96DN2 955 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 RUSC1Q9BVN2 902 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 MAGEF1Q9HAY2 307 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 ERVK-5Q9HDB9 667 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 ST3GAL5Q9UNP4 418 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 TET1Q8NFU7 2136 aa21.91■■□□□ 1.1
COL9A3-204ENST00000463487 DENND3A2RUS2 1198 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 HIP1RO75146 1068 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 TBCAO75347 108 aaKnown RBP21.9■■□□□ 1.1
COL9A3-204ENST00000463487 ERLIN2O94905 339 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 AMPD3Q01432 767 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 RASIP1Q5U651 963 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 CATSPER4Q7RTX7 472 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 PANK2Q9BZ23 570 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 IFT122Q9HBG6 1241 aa21.9■■□□□ 1.1
COL9A3-204ENST00000463487 LARSQ9P2J5 1176 aaKnown RBP21.9■■□□□ 1.1
COL9A3-204ENST00000463487 ATP2A2P16615 1042 aaKnown RBP21.89■■□□□ 1.09
COL9A3-204ENST00000463487 PTENP60484 403 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 WDR5P61964 334 aaKnown RBP21.89■■□□□ 1.09
COL9A3-204ENST00000463487 LRIT3Q3SXY7 679 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 IFNLR1Q8IU57 520 aaPredicted RBP21.89■■□□□ 1.09
COL9A3-204ENST00000463487 DHX58Q96C10 678 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 CHAMP1Q96JM3 812 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 OSBPL7Q9BZF2 842 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 GDPD2Q9HCC8 539 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 CHST12Q9NRB3 414 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 C1orf112Q9NSG2 853 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 DACT1Q9NYF0 836 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 KCNH3Q9ULD8 1083 aa21.89■■□□□ 1.09
COL9A3-204ENST00000463487 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.88■■□□□ 1.09
COL9A3-204ENST00000463487 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.88■■□□□ 1.09
COL9A3-204ENST00000463487 A0A1W2PQ27 194 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 A0A1W2PQ64 194 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 A0A1W2PQD8 194 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 INO80B-WBP1J3KQ70 363 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 FAM13AO94988 1023 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 EFNA5P52803 228 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 SMTNP53814 917 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 CEP57L1Q8IYX8 460 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 CCDC34Q96HJ3 373 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 TNMDQ9H2S6 317 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 USP25Q9UHP3 1055 aa21.88■■□□□ 1.09
COL9A3-204ENST00000463487 CCDC169A6NNP5 214 aa21.87■■□□□ 1.09
COL9A3-204ENST00000463487 H0YCG3 227 aa21.87■■□□□ 1.09
COL9A3-204ENST00000463487 POLR2DO15514 142 aaKnown RBP21.87■■□□□ 1.09
COL9A3-204ENST00000463487 PEX3P56589 373 aa21.87■■□□□ 1.09
COL9A3-204ENST00000463487 RAD51AP2Q09MP3 1159 aa21.87■■□□□ 1.09
COL9A3-204ENST00000463487 MRPS27Q92552 414 aaKnown RBP21.87■■□□□ 1.09
COL9A3-204ENST00000463487 TSPYL2Q9H2G4 693 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-204ENST00000463487 CXXC1Q9P0U4 656 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-204ENST00000463487 MICAL3Q7RTP6 2002 aa21.87■■□□□ 1.09
COL9A3-204ENST00000463487 A0A087X0B3 334 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PLS3P13797 630 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 PFKFB1P16118 471 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 SCP2P22307 547 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 AXLP30530 894 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 ABCD1P33897 745 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 SMAD3P84022 425 aaKnown RBP21.86■■□□□ 1.09
COL9A3-204ENST00000463487 MAPK6Q16659 721 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 NAALADL2Q58DX5 795 aa21.86■■□□□ 1.09
COL9A3-204ENST00000463487 CDCA2Q69YH5 1023 aaPredicted RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms