RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CNOT6LQ96LI5 555 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 KCNQ5Q9NR82 932 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TMEM260Q9NX78 707 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 SATB2Q9UPW6 733 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TNRC6CQ9HCJ0 1690 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 ENO4A6NNW6 628 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TBC1D12O60347 775 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 SNHG28P0DPA3 235 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 BCRP11274 1271 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 VEGFAP15692 232 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CA8P35219 290 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 ARHGAP4P98171 946 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RASSF7Q02833 373 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 DPYDQ12882 1025 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RASA3Q14644 834 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TCP11X2Q5H9J9 407 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 SCYL3Q8IZE3 742 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 PRPF38AQ8NAV1 312 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 NLRP7Q8WX94 980 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TNFRSF25Q93038 417 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 EPC1Q9H2F5 836 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 BAZ2AQ9UIF9 1905 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 IGKV6D-41A0A0C4DH26 115 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 WDR46O15213 610 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MOCS3O95396 460 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RAD23BP54727 409 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 GADL1Q6ZQY3 521 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CLEC10AQ8IUN9 316 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MFN1Q8IWA4 741 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MICALL2Q8IY33 904 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CPXCR1Q8N123 301 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RILPQ96NA2 401 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TEKT3Q9BXF9 490 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TAF1DQ9H5J8 278 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 PDP2Q9P2J9 529 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CNOT7Q9UIV1 285 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 L1RE1Q9UN81 338 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 ATP8A1Q9Y2Q0 1164 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TMX2Q9Y320 296 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TAF1P21675 1872 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 PRR29P0C7W0 189 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 ATF2P15336 505 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 OSBPP22059 807 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 CAP2P40123 477 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 STAT1P42224 750 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 LMNB2Q03252 620 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 EVX2Q03828 476 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 PTGISQ16647 500 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 MAN2A1Q16706 1144 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 HERC4Q5GLZ8 1057 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 NT5DC1Q5TFE4 455 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 NAIF1Q69YI7 327 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 RSRC2Q7L4I2 434 aaKnown RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 MYOCDQ8IZQ8 938 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 MTMR14Q8NCE2 650 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 NKX2-3Q8TAU0 364 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 DPF2Q92785 391 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC97Q96F63 343 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 VPS37BQ9H9H4 285 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 GOLGA8QA0A0J9YX86 632 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 GOLGA8OA6NCC3 632 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 GOLGA8NF8WBI6 632 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 MYO1FO00160 1098 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 SPAG7O75391 227 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 FSBPO95073 299 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 CPP00450 1065 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 SERPING1P05155 500 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 GHRP10912 638 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 ALAS1P13196 640 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 LMNB1P20700 586 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 KRT31Q15323 416 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 ACBD5Q5T8D3 534 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 UNC13DQ70J99 1090 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 DYMQ7RTS9 669 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 NLRX1Q86UT6 975 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 GPBP1Q86WP2 473 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 SAMD3Q8N6K7 520 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 FAM167BQ9BTA0 163 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 DDX23Q9BUQ8 820 aaKnown RBP6.65□□□□□ -1.34
VPS13D-202ENST00000460333 NOD2Q9HC29 1040 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 ITGB1BP2Q9UKP3 347 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 PRR12Q9ULL5 1215 aa6.65□□□□□ -1.34
VPS13D-202ENST00000460333 A0A087WWV3 80 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 A0A1W2PQC6 194 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L15C9J2P7 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L13C9JLJ4 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L11C9JVI0 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L18D6R9N7 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L22D6RA61 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L17D6RBQ6 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L19D6RCP7 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L20D6RJB6 530 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 DIAPH2O60879 1101 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 ZRANB2O95218 330 aaKnown RBP eCLIP6.65□□□□□ -1.35
VPS13D-202ENST00000460333 HNRNPCP07910 306 aaKnown RBP eCLIP6.65□□□□□ -1.359e-6■■■□□ 16.8
VPS13D-202ENST00000460333 SCP2P22307 547 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 CCNE1P24864 410 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 CDC25AP30304 524 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 KIF11P52732 1056 aa6.65□□□□□ -1.35
VPS13D-202ENST00000460333 USP17L24Q0WX57 530 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms