RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CYP4F22Q6NT55 531 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 RINT1Q6NUQ1 792 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 CCDC137Q6PK04 289 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 LRIG3Q6UXM1 1119 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 JAMLQ86YT9 394 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 FBXO25Q8TCJ0 367 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 HEMGNQ9BXL5 484 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 SUCLA2Q9P2R7 463 aaPredicted RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 PCDHAC2Q9Y5I4 1007 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 PITPNM2Q9BZ72 1349 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 EML1O00423 815 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 THAP12O43422 761 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 CTNNA2P26232 953 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 SLC12A3P55017 1021 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 EIF3BP55884 814 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 SGO2Q562F6 1265 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 ACTRT1Q8TDG2 376 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 PRMT1Q99873 361 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 CCDC77Q9BR77 488 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 STK33Q9BYT3 514 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 HOMER3Q9NSC5 361 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 DDX20Q9UHI6 824 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 MYH13Q9UKX3 1938 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 PASKQ96RG2 1323 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 COL18A1P39060 1754 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 DCDC2CA8MYV0 355 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 MXI1P50539 228 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ITGB3BPQ13352 177 aaPredicted RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 NBPF9Q3BBW0 867 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ZCWPW2Q504Y3 356 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 MIGA2Q7L4E1 593 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 FMNL3Q8IVF7 1028 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 SLC20A1Q8WUM9 679 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 DCAF4Q8WV16 495 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 FAM212AQ96EL1 285 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 CALR3Q96L12 384 aaKnown RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 ACTR5Q9H9F9 607 aaPredicted RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 TAS2R14Q9NYV8 317 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 PKD1L3Q7Z443 1732 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ZNF142P52746 1687 aaPredicted RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 HOXA7P31268 230 aaPredicted RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 XKR9Q5GH70 373 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 NUGGCQ68CJ6 796 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 CNPY4Q8N129 248 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 SLC30A5Q8TAD4 765 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ARHGEF26Q96DR7 871 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 XPO6Q96QU8 1125 aaKnown RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 AGPAT1Q99943 283 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ERP44Q9BS26 406 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 CNOT10Q9H9A5 744 aaKnown RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 PARP2Q9UGN5 583 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ZC3H4Q9UPT8 1303 aaKnown RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 ANKRD62A6NC57 917 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 TOM1O60784 492 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 ALAS1P13196 640 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 SSTR3P32745 418 aaPredicted RBP12.8□□□□□ -0.36
MSH6-204ENST00000445503 STAT2P52630 851 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 GPC5P78333 572 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 EPHA7Q15375 998 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 KAZNQ674X7 775 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 FAM118BQ9BPY3 351 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 LRP6O75581 1613 aa12.8□□□□□ -0.36
MSH6-204ENST00000445503 CYP26A1O43174 497 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 ECEL1O95672 775 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 PEX3P56589 373 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 TRAF1Q13077 416 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 HP1BP3Q5SSJ5 553 aaPredicted RBP12.79□□□□□ -0.36
MSH6-204ENST00000445503 TMEM179Q6ZVK1 233 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 NT5DC3Q86UY8 548 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 N4BP2L2Q92802 583 aaPredicted RBP12.79□□□□□ -0.36
MSH6-204ENST00000445503 SAAL1Q96ER3 474 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 ADAM33Q9BZ11 813 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 APEX2Q9UBZ4 518 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 NR2E1Q9Y466 385 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 DDTLA6NHG4 134 aaPredicted RBP12.79□□□□□ -0.36
MSH6-204ENST00000445503 HIP1RO75146 1068 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 COBLL1Q53SF7 1204 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 PADI6Q6TGC4 694 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 KIFAP3Q92845 792 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 KCNQ5Q9NR82 932 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 CASZ1Q86V15 1759 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 COMTP21964 271 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 LONRF1Q17RB8 773 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 EPC2Q52LR7 807 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 TMC3Q7Z5M5 1100 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 RHOT2Q8IXI1 618 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 PARP9Q8IXQ6 854 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 LXNQ9BS40 222 aa12.79□□□□□ -0.36
MSH6-204ENST00000445503 F8VZ95 297 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 SLC16A4O15374 487 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 SHBGP04278 402 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 PDE6CP51160 858 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 QPCTQ16769 361 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 VSIG1Q86XK7 387 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 EPS8L3Q8TE67 593 aaKnown RBP12.78□□□□□ -0.36
MSH6-204ENST00000445503 ACP6Q9NPH0 428 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 AJAP1Q9UKB5 411 aaPredicted RBP12.78□□□□□ -0.36
MSH6-204ENST00000445503 CICQ96RK0 1608 aaPredicted RBP12.78□□□□□ -0.36
MSH6-204ENST00000445503 TESPA1A2RU30 521 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms