RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 XKR3Q5GH77 459 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 APOBEC3HQ6NTF7 200 aaKnown RBP13.23□□□□□ -0.29
TCOF1-205ENST00000439160 HAUS1Q96CS2 278 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 EHD4Q9H223 541 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 MAD1L1Q9Y6D9 718 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 DGAT1O75907 488 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 GRB10Q13322 594 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 ILDR1Q86SU0 546 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-205ENST00000439160 RIOX1Q9H6W3 641 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 LRRC4Q9HBW1 653 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 FAM114A2Q9NRY5 505 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 ODF2LQ9ULJ1 636 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 FTLP02792 175 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 CDO1Q16878 200 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 RIT2Q99578 217 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 NGRNQ9NPE2 291 aaKnown RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 ACOT2P49753 483 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 GEN1Q17RS7 908 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 NBPF12Q5TAG4 269 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 FBXL13Q8NEE6 735 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 FAM71BQ8TC56 605 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 CD2APQ9Y5K6 639 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 KLK7P49862 253 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 RWDD2BP57060 319 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 GPC5P78333 572 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 EVX2Q03828 476 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 TWF2Q6IBS0 349 aaKnown RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 RAD9BQ6WBX8 426 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 CCDC110Q8TBZ0 833 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 P3H4Q92791 437 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 HOMER3Q9NSC5 361 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 NFU1Q9UMS0 254 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 GOLGA8KD6RF30 607 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 POC1B-GALNT4F8VUJ3 575 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 GYPCP04921 128 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 SLURP2P0DP57 97 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 ADCY1Q08828 1119 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 ZNF211Q13398 564 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 DACT2Q5SW24 774 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 SCYL3Q8IZE3 742 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 GPD1LQ8N335 351 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 MRPL4Q9BYD3 311 aaKnown RBP13.22□□□□□ -0.29
TCOF1-205ENST00000439160 HSPBP1Q9NZL4 362 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 TMX2Q9Y320 296 aa13.22□□□□□ -0.29
TCOF1-205ENST00000439160 SLC9A1P19634 815 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 MAN1A1P33908 653 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 SARNPP82979 210 aaKnown RBP13.21□□□□□ -0.29
TCOF1-205ENST00000439160 FYB2Q5VWT5 728 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 SLC30A10Q6XR72 485 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 CEP57Q86XR8 500 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 CCDC13Q8IYE1 715 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 TMEM35BQ8NCS4 154 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 BCAS4Q8TDM0 211 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 FAM163AQ96GL9 167 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-205ENST00000439160 HEMGNQ9BXL5 484 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 FAN1Q9Y2M0 1017 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 ANO9A1A5B4 782 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 PLSCR1O15162 318 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 MED24O75448 989 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 YWHAGP61981 247 aaKnown RBP eCLIP13.21□□□□□ -0.29
TCOF1-205ENST00000439160 CASP8Q14790 479 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 RINT1Q6NUQ1 792 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 MTFR1LQ9H019 292 aa13.21□□□□□ -0.29
TCOF1-205ENST00000439160 DNAJC17Q9NVM6 304 aaKnown RBP13.21□□□□□ -0.29
TCOF1-205ENST00000439160 CYTH3O43739 400 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 ICAM1P05362 532 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 ZNF18P17022 549 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 SSTR3P32745 418 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-205ENST00000439160 LMNB2Q03252 620 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 PPP2R5CQ13362 524 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 VSIG1Q86XK7 387 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 CCNYQ8ND76 341 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 SEPT1Q8WYJ6 367 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 AKT1S1Q96B36 256 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 FUCA2Q9BTY2 467 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 CAPS2Q9BXY5 557 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 ZWILCHQ9H900 591 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 PIK3C2AO00443 1686 aa13.21□□□□□ -0.3
TCOF1-205ENST00000439160 ASB14A6NK59 587 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 ATP1A1P05023 1023 aaKnown RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 UCHL3P15374 230 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 VEGFAP15692 232 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 HSPA6P17066 643 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 CYP11B2P19099 503 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 DR1Q01658 176 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 KCTD6Q8NC69 237 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 BBOF1Q8ND07 529 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 SLC38A10Q9HBR0 1119 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 NFAT5O94916 1531 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RSPH10B2B2RC85 870 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 RSPH10BP0C881 870 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 PHBP35232 272 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 SLCO1A2P46721 670 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 GPC3P51654 580 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 ARPP19P56211 112 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 PRKCEQ02156 737 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 PDZD4Q76G19 769 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-205ENST00000439160 GMCL1Q96IK5 515 aa13.2□□□□□ -0.3
TCOF1-205ENST00000439160 EDEM3Q9BZQ6 932 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms