RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CDK17Q00537 523 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 KIAA2012Q0VF49 1180 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 PCOLCEQ15113 449 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 PLEKHG6Q3KR16 790 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 TRIM68Q6AZZ1 485 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 LCNL1Q6ZST4 164 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 KBTBD2Q8IY47 623 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 RSAD2Q8WXG1 361 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 RAX2Q96IS3 184 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 WDR92Q96MX6 357 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP40-204ENST00000427947 DPP7Q9UHL4 492 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 EVLQ9UI08 416 aaPredicted RBP5.58□□□□□ -1.52
USP40-204ENST00000427947 ADAMTS20P59510 1910 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 A0A0A6YYK5 440 aaPredicted RBP5.57□□□□□ -1.52
USP40-204ENST00000427947 TRIM75PA6NK02 468 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 NRP2O60462 931 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 ALDH1L1O75891 902 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 SASH1O94885 1247 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 S100BP04271 92 aaPredicted RBP5.57□□□□□ -1.52
USP40-204ENST00000427947 MTHFD2P13995 350 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 GPR15P49685 360 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 ADAM15Q13444 863 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 ZNF568Q3ZCX4 644 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 ZMAT1Q5H9K5 638 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 ODR4Q5SWX8 454 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 BORAQ6PGQ7 559 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 KLHDC10Q6PID8 442 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 GAREM2Q75VX8 874 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 SLC41A1Q8IVJ1 513 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 MARCH10Q8NA82 808 aaPredicted RBP5.57□□□□□ -1.52
USP40-204ENST00000427947 FEZF2Q8TBJ5 459 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 AUTS2Q8WXX7 1259 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 NKD2Q969F2 451 aaPredicted RBP5.57□□□□□ -1.52
USP40-204ENST00000427947 FUBP3Q96I24 572 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP40-204ENST00000427947 FAXDC2Q96IV6 333 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 SOX7Q9BT81 388 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 VWA7Q9Y334 891 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 CDY2AQ9Y6F7 541 aa5.57□□□□□ -1.52
USP40-204ENST00000427947 XPOTO43592 962 aaKnown RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 B4GALT3O60512 393 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 HNRNPLP14866 589 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP40-204ENST00000427947 NEK2P51955 445 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 NRG3P56975 720 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 CCT2P78371 535 aaKnown RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 MGAT5Q09328 741 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 ACAP2Q15057 778 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 TTF1Q15361 905 aaPredicted RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 PCBP2Q15366 365 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP40-204ENST00000427947 ZNF827Q17R98 1081 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 MUM1Q2TAK8 710 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 CCDC178Q5BJE1 867 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 AGBL4Q5VU57 503 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 LMBR1LQ6UX01 489 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 KCNK18Q7Z418 384 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 ZBTB46Q86UZ6 589 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 PNMA8AQ86V59 439 aaPredicted RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 GLB1L2Q8IW92 636 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 ZDHHC14Q8IZN3 488 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 GFM2Q969S9 779 aaKnown RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 FDXACB1Q9BRP7 624 aaPredicted RBP5.56□□□□□ -1.52
USP40-204ENST00000427947 KRTAP4-8Q9BYQ9 185 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 GOLGA2P5Q9HBQ8 144 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 GPR45Q9Y5Y3 372 aa5.56□□□□□ -1.52
USP40-204ENST00000427947 FZD9O00144 591 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 B4GALT4O60513 344 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 SEC24DO94855 1032 aaPredicted RBP5.55□□□□□ -1.52
USP40-204ENST00000427947 RBP3P10745 1247 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 CCND1P24385 295 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 MTNR1BP49286 362 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 JAG1P78504 1218 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 SIAH1Q8IUQ4 282 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 LGI4Q8N135 537 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 OR14K1Q8NGZ2 314 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 TSPEARQ8WU66 669 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 CHMP4CQ96CF2 233 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 KCNC2Q96PR1 638 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 SLC2A13Q96QE2 648 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 OR10A2Q9H208 303 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 ZCCHC4Q9H5U6 513 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 IFT122Q9HBG6 1241 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 SPEF1Q9Y4P9 236 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 MRFAP1Q9Y605 127 aa5.55□□□□□ -1.52
USP40-204ENST00000427947 DAPK3O43293 454 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PCDHGA12O60330 932 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 FSBPO95073 299 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 AGXTP21549 392 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 SLC5A3P53794 718 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 SESN2P58004 480 aaPredicted RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 CD69Q07108 199 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 TBR1Q16650 682 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 MAN2A1Q16706 1144 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 KRTAP19-4Q3LI73 84 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 MBNL2Q5VZF2 373 aaKnown RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 USP30Q70CQ3 517 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 PPP1R14CQ8TAE6 165 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 GCDHQ92947 438 aaPredicted RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 UIMC1Q96RL1 719 aa5.54□□□□□ -1.52
USP40-204ENST00000427947 ACE2Q9BYF1 805 aaPredicted RBP5.54□□□□□ -1.52
USP40-204ENST00000427947 OSBPL6Q9BZF3 934 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms