RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SORBS3O60504 671 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 KRT13P13646 458 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 ABCD1P33897 745 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 FMO5P49326 533 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 BFSP1Q12934 665 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 Q3C1V9 767 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 INTS8Q75QN2 995 aaKnown RBP27.53■■■□□ 2
SHOX2-201ENST00000389589 TBX20Q9UMR3 447 aa27.53■■■□□ 2
SHOX2-201ENST00000389589 KIF5AQ12840 1032 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 RAPGEF1Q13905 1077 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 ASTE1Q2TB18 679 aaPredicted RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 XXYLT1Q8NBI6 393 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 ANKRD7Q92527 254 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 NAPGQ99747 312 aaPredicted RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 DNAJC25-GNG10A0A024R161 153 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 LOC102724159A0A0B4J2E5 919 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 ZNF263O14978 683 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 TLR2O60603 784 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 FARP2O94887 1054 aaPredicted RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 OATP04181 439 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 ACTN1P12814 892 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 CYP27A1Q02318 531 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 APBA1Q02410 837 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 PWP2Q15269 919 aaKnown RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 TDRD12Q587J7 1177 aaKnown RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 MAP4K3Q8IVH8 894 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 MNS1Q8NEH6 495 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 IFIH1Q9BYX4 1025 aaKnown RBP27.52■■■□□ 2
SHOX2-201ENST00000389589 DAAM1Q9Y4D1 1078 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 PCDHA13Q9Y5I0 950 aa27.52■■■□□ 2
SHOX2-201ENST00000389589 H0YCG3 227 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 ERVK-9P63128 1117 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 ASIC2Q16515 512 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 IFT74Q96LB3 600 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 SPAG5Q96R06 1193 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 HSPBP1Q9NZL4 362 aa27.51■■□□□ 1.99
SHOX2-201ENST00000389589 SIX2Q9NPC8 291 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 XPNPEP1Q9NQW7 623 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 TRIM10Q9UDY6 481 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 BZW2Q9Y6E2 419 aaKnown RBP27.5■■□□□ 1.99
SHOX2-201ENST00000389589 RBAK-RBAKDNI3L0D1 243 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 MTERF2Q49AM1 385 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 FAM160B1Q5W0V3 765 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 METTL7BQ6UX53 244 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 MTERF4Q7Z6M4 381 aaKnown RBP27.5■■□□□ 1.99
SHOX2-201ENST00000389589 ZNF710Q8N1W2 664 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 NIFKQ9BYG3 293 aaKnown RBP27.5■■□□□ 1.99
SHOX2-201ENST00000389589 SLC45A1Q9Y2W3 748 aa27.5■■□□□ 1.99
SHOX2-201ENST00000389589 DENND3A2RUS2 1198 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 PGK2P07205 417 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 ATP4AP20648 1035 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 SCP2P22307 547 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 FKBP1BP68106 108 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 RBM10P98175 930 aaKnown RBP27.49■■□□□ 1.99
SHOX2-201ENST00000389589 BSNDQ8WZ55 320 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 FGD4Q96M96 766 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 CBWD1Q9BRT8 395 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 LACRTQ9GZZ8 138 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 R3HDMLQ9H3Y0 253 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 PCIF1Q9H4Z3 704 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 ZNF408Q9H9D4 720 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 LUC7LQ9NQ29 371 aaKnown RBP27.49■■□□□ 1.99
SHOX2-201ENST00000389589 FHOD1Q9Y613 1164 aa27.49■■□□□ 1.99
SHOX2-201ENST00000389589 GSTTP1A0A1W2PQM5 241 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 CETPP11597 493 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 KLHL30Q0D2K2 578 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 MAP1SQ66K74 1059 aaPredicted RBP27.48■■□□□ 1.99
SHOX2-201ENST00000389589 ZNF526Q8TF50 670 aaPredicted RBP27.48■■□□□ 1.99
SHOX2-201ENST00000389589 RCCD1A6NED2 376 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 N4BP1O75113 896 aaKnown RBP27.48■■□□□ 1.99
SHOX2-201ENST00000389589 POLGP54098 1239 aaPredicted RBP27.48■■□□□ 1.99
SHOX2-201ENST00000389589 EMC2Q15006 297 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 RDH13Q8NBN7 331 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 AFAP1L1Q8TED9 768 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 SEPT1Q8WYJ6 367 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 CARD6Q9BX69 1037 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 POLR3FQ9H1D9 316 aaPredicted RBP27.48■■□□□ 1.99
SHOX2-201ENST00000389589 NRBP2Q9NSY0 501 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 MCM3APO60318 1980 aa27.48■■□□□ 1.99
SHOX2-201ENST00000389589 TISP43B9A030 160 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 SOCS7O14512 581 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 GGPS1O95749 300 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 MAGEA1P43355 309 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 MYL7Q01449 175 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 CDC23Q9UJX2 597 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 P4HA2O15460 535 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 TRIM49P0CI25 452 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 TRIM49CP0CI26 452 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 VAMP7P51809 220 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 GTF2A2P52657 109 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 MCCD1P59942 119 aaPredicted RBP27.47■■□□□ 1.99
SHOX2-201ENST00000389589 MORC4Q8TE76 937 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 MLXIPQ9HAP2 919 aa27.47■■□□□ 1.99
SHOX2-201ENST00000389589 PJA2O43164 708 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 POTEJP0CG39 1038 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 SOX10P56693 466 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 JAM2P57087 298 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 CCNA1P78396 465 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 WDR78Q5VTH9 848 aa27.46■■□□□ 1.99
SHOX2-201ENST00000389589 KIFC3Q9BVG8 833 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms