RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 MAFBQ9Y5Q3 323 aaPredicted RBP13.71□□□□□ -0.21
VRK3-202ENST00000377011 NRCAMQ92823 1304 aa13.71□□□□□ -0.22
VRK3-202ENST00000377011 POTEB3A0JP26 581 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 GAS7O60861 476 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 ARHGEF15O94989 841 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 SLC34A2O95436 690 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 TPM1P09493 284 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 ATP2B1P20020 1258 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 TRAPPC10P48553 1259 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 ISM2Q6H9L7 571 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 PDXDC2PQ6P474 469 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 POTEBQ6S5H4 581 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 SYT10Q6XYQ8 523 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 SPRED2Q7Z698 418 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 TMEM139Q8IV31 216 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 FAM177A1Q8N128 213 aaPredicted RBP13.7□□□□□ -0.22
VRK3-202ENST00000377011 RETREG2Q8NC44 543 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 AZI2Q9H6S1 392 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 DISC1Q9NRI5 854 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 FAM53CQ9NYF3 392 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 NFE2L3Q9Y4A8 694 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 MYO9BQ13459 2157 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 IGSF9BQ9UPX0 1349 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 CXCL10P02778 98 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 SLFN14P0C7P3 912 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 VCANP13611 3396 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 SPIRE1Q08AE8 756 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 MGAT3Q09327 533 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 TAF3Q5VWG9 929 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 PPP4R3AQ6IN85 833 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 MIS18BP1Q6P0N0 1132 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 PSRC1Q6PGN9 363 aaPredicted RBP13.7□□□□□ -0.22
VRK3-202ENST00000377011 MOXD1Q6UVY6 613 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 REXO1L1PQ8IX06 675 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 KRT222Q8N1A0 295 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 GSDMAQ96QA5 445 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 RIT2Q99578 217 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 TEKT3Q9BXF9 490 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 PBX4Q9BYU1 374 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 FAM49AQ9H0Q0 323 aaPredicted RBP13.7□□□□□ -0.22
VRK3-202ENST00000377011 CDHR5Q9HBB8 845 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 INTS13Q9NVM9 706 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 DNAI1Q9UI46 699 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 YBX2Q9Y2T7 364 aaKnown RBP13.7□□□□□ -0.22
VRK3-202ENST00000377011 SAMM50Q9Y512 469 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 PCDHA10Q9Y5I2 948 aa13.7□□□□□ -0.22
VRK3-202ENST00000377011 XIRP2A4UGR9 3374 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 ZBBXA8MT70 800 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 RSPH10B2B2RC85 870 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 RSPH10BP0C881 870 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 H2AFXP16104 143 aaPredicted RBP13.69□□□□□ -0.22
VRK3-202ENST00000377011 DEFB103AP81534 67 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 KRT76Q01546 638 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 TRIM65Q6PJ69 517 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 MTHFD1LQ6UB35 978 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.69□□□□□ -0.22
VRK3-202ENST00000377011 BANK1Q8NDB2 785 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 ATP8B4Q8TF62 1192 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 PPP1R16BQ96T49 567 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 BAG1Q99933 345 aaPredicted RBP13.69□□□□□ -0.22
VRK3-202ENST00000377011 NAA15Q9BXJ9 866 aaKnown RBP13.69□□□□□ -0.22
VRK3-202ENST00000377011 CSRNP2Q9H175 543 aa13.69□□□□□ -0.22
VRK3-202ENST00000377011 MICAL3Q7RTP6 2002 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 A0A1B0GTH6 734 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 ZBTB39O15060 712 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 CDK11BP21127 795 aaKnown RBP13.68□□□□□ -0.22
VRK3-202ENST00000377011 KLRC1P26715 233 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 MKRN4PQ13434 485 aaPredicted RBP13.68□□□□□ -0.22
VRK3-202ENST00000377011 NR1I3Q14994 352 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 ELF2Q15723 593 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 KMT5BQ4FZB7 885 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 SPATA1Q5VX52 437 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 DEFB123Q8N688 67 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 DBF4BQ8NFT6 615 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 PANX2Q96RD6 677 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 CEP89Q96ST8 783 aa13.68□□□□□ -0.22
VRK3-202ENST00000377011 WDR64B1ANS9 1081 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 C22orf31O95567 290 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 PSAPP07602 524 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 PRR29P0C7W0 189 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 PRKCEQ02156 737 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 GRIN1Q05586 938 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 DRP2Q13474 957 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 MIER3Q7Z3K6 550 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 RPUSD2Q8IZ73 545 aaKnown RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 ZNF668Q96K58 619 aaPredicted RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 GUCD1Q96NT3 240 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 AGO3Q9H9G7 860 aaKnown RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 RGL1Q9NZL6 768 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 PPP2R2CQ9Y2T4 447 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 GHRP10912 638 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 DNAJB2P25686 324 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 SMAD3P84022 425 aaKnown RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 ATP2C1P98194 919 aaPredicted RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 BMS1Q14692 1282 aaKnown RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 LPIN1Q14693 890 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 NAA30Q147X3 362 aaPredicted RBP13.67□□□□□ -0.22
VRK3-202ENST00000377011 ZNF174Q15697 407 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 FAM26DQ5JW98 314 aa13.67□□□□□ -0.22
VRK3-202ENST00000377011 FAM160B1Q5W0V3 765 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms