RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PEX5LQ8IYB4 626 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 DCP1BQ8IZD4 617 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SHCBP1Q8NEM2 672 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 TRIM58Q8NG06 486 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 FAM149B1Q96BN6 582 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SGSM3Q96HU1 749 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 ZNF496Q96IT1 587 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 EIF3CQ99613 913 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SLIT1O75093 1534 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 RRN3P2A6NIE6 340 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 A6NJR5 290 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 ACTN3Q08043 901 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 KRT81Q14533 505 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 EPHA10Q5JZY3 1008 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 C20orf194Q5TEA3 1177 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SNX19Q92543 992 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 TRIM56Q9BRZ2 755 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SCUBE2Q9NQ36 999 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 HEMK1Q9Y5R4 338 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 FAM47E-STBD1D6RA91 191 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 DYRK3O43781 588 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 TMCC1O94876 653 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 KRT8P05787 483 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 VIL1P09327 827 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 CTNNA1P35221 906 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 COG2Q14746 738 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 DCAF17Q5H9S7 520 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 MAEAQ7L5Y9 396 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SNX29Q8TEQ0 813 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SLC39A3Q9BRY0 314 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 FAM167BQ9BTA0 163 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 CLSTN2Q9H4D0 955 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 BAG5Q9UL15 447 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 A0A1B0GVL5 298 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 SUN1O94901 812 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 ATP1A1P05023 1023 aaKnown RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 CALCRLQ16602 461 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 CCSAPQ6IQ19 270 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 GLMNQ92990 594 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 LRRC46Q96FV0 321 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 RAB17Q9H0T7 212 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 VPS33BQ9H267 617 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 ARMT1Q9H993 441 aa9.22□□□□□ -0.93
SYNE1-206ENST00000367253 POLR1AO95602 1720 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-206ENST00000367253 DNAJC6O75061 913 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 JAK3P52333 1124 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 CREMQ03060 361 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 SLFN12LQ6IEE8 588 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ANKS3Q6ZW76 656 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 PPP4R1Q8TF05 950 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 MAIP1Q8WWC4 291 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 MRPS31Q92665 395 aaKnown RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ASIC4Q96FT7 647 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 PHACTR3Q96KR7 559 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 FGD4Q96M96 766 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 SMAD5Q99717 465 aaKnown RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 YIPF2Q9BWQ6 316 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 MROH2AA6NES4 1674 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 RIMS1Q86UR5 1692 aaKnown RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 PTGS2P35354 604 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ZNF75DP51815 510 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 SCARF1Q14162 830 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ELOAQ14241 798 aaKnown RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 RPS6KA2Q15349 733 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 SYDE2Q5VT97 1194 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 OLFML2BQ68BL8 750 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 TUBA3EQ6PEY2 450 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 KLHL7Q8IXQ5 586 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ZSCAN18Q8TBC5 510 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 ZC3H15Q8WU90 426 aaKnown RBP9.21□□□□□ -0.93
SYNE1-206ENST00000367253 SH3KBP1Q96B97 665 aa9.21□□□□□ -0.93
SYNE1-206ENST00000367253 CPSF1Q10570 1443 aaKnown RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 TARSL2A2RTX5 802 aaKnown RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 RASSF10A6NK89 507 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 NUP62P37198 522 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 ATP1A2P50993 1020 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 RNASE9P60153 205 aaKnown RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 KIF23Q02241 960 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 FSTL1Q12841 308 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 PPP2R5CQ13362 524 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 ZNF394Q53GI3 561 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 KHDRBS2Q5VWX1 349 aaKnown RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 KRT73Q86Y46 540 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 CCDC197Q8NCU1 140 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 PHC3Q8NDX5 983 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 NRBF2Q96F24 287 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 CCDC138Q96M89 665 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 PALD1Q9ULE6 856 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 PCDHB6Q9Y5E3 794 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 CDK12Q9NYV4 1490 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-206ENST00000367253 POTEFA5A3E0 1075 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 TRIM64A6NGJ6 449 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 TRIM64BA6NI03 449 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 E9PMD0 336 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 GOLGA8SH3BPF8 625 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 MED7O43513 233 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 KRT72Q14CN4 511 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 FBXO22Q8NEZ5 403 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 ZNF560Q96MR9 790 aa9.21□□□□□ -0.94
SYNE1-206ENST00000367253 USP31Q70CQ4 1352 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms