RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 COPEO14579 308 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 CYBBP04839 570 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 KITP10721 976 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 ST8SIA6P61647 398 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 SLFN12LQ6IEE8 588 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 GEMIN8Q9NWZ8 242 aaKnown RBP10.85□□□□□ -0.67
CLIP1-202ENST00000358808 C5orf58C9J3I9 102 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 PDE8BO95263 885 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 DHX9Q08211 1270 aaKnown RBP10.85□□□□□ -0.67
CLIP1-202ENST00000358808 EFTUD2Q15029 972 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■□□□ 11.5
CLIP1-202ENST00000358808 MFSD14CQ5VZR4 134 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 MFN1Q8IWA4 741 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 CCNYL1Q8N7R7 359 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 RASGRP4Q8TDF6 673 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 ZNF274Q96GC6 653 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-202ENST00000358808 MASTLQ96GX5 879 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 RAD18Q9NS91 495 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 FANCLQ9NW38 375 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 FTCDO95954 541 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 PHKA1P46020 1223 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 KCNJ6P48051 423 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 ARMC6Q6NXE6 501 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 RPAINQ86UA6 219 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 DDIASQ8IXT1 998 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 BEST2Q8NFU1 509 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 SMYD3Q9H7B4 428 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 MAN1C1Q9NR34 630 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 CCDC195A0A1B0GUA6 201 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 LRRC53A6NM62 1247 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 IPO5O00410 1097 aaKnown RBP10.85□□□□□ -0.67
CLIP1-202ENST00000358808 MDM2Q00987 491 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-202ENST00000358808 ANGPT1Q15389 498 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 KANSL2Q9H9L4 492 aa10.85□□□□□ -0.67
CLIP1-202ENST00000358808 KDM4FA0A1W2PPD8 638 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PJA2O43164 708 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 MAP4P27816 1152 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SNAP25P60880 206 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 DMC1Q14565 340 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 ZNF394Q53GI3 561 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PIGSQ96S52 555 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 TSSK1BQ9BXA7 367 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PARVGQ9HBI0 331 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 TMEM161AQ9NX61 479 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 APOBEC2Q9Y235 224 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 C21orf2O43822 256 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CTNND1O60716 968 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 MMP10P09238 476 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 ADD1P35611 737 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CYP27A1Q02318 531 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 MAP3K10Q02779 954 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 NME3Q13232 169 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 ME3Q16798 604 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 EFHBQ8N7U6 833 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CUEDC2Q9H467 287 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 AIPL1Q9NZN9 384 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 BTBD18B2RXH4 712 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CASP14P31944 242 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 RNF135Q8IUD6 432 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PPP1R14AQ96A00 147 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 RMDN1Q96DB5 314 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PDE11AQ9HCR9 933 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SRP68Q9UHB9 627 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 HEY1Q9Y5J3 304 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 C1orf167Q5SNV9 1468 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 A0A0G2JND7 137 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 KRT37O76014 449 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 TJP3O95049 919 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 ALDH1A1P00352 501 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PCP11498 1178 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CACNB2Q08289 660 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 CTTNQ14247 550 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 NKX1-1Q15270 411 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SYT2Q8N9I0 419 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 RFWD2Q8NHY2 731 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SH3TC2Q8TF17 1288 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 P2RX5Q93086 422 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 MTIF3Q9H2K0 278 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SEC31BQ9NQW1 1179 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 SPATS2LQ9NUQ6 558 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PPARGC1AQ9UBK2 798 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 KCNH4Q9UQ05 1017 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 RNF103-CHMP3A0A140T963 221 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 RALAP11233 206 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 GSPT1P15170 499 aaKnown RBP10.84□□□□□ -0.67
CLIP1-202ENST00000358808 VCAM1P19320 739 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PHKA2P46019 1235 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PRAMEP78395 509 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 TEDDM1Q5T9Z0 273 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 TBCKQ8TEA7 893 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 COPRSQ9NQ92 184 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 ASNSD1Q9NWL6 643 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 PALD1Q9ULE6 856 aa10.84□□□□□ -0.67
CLIP1-202ENST00000358808 EPHB4P54760 987 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 DR1Q01658 176 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 WDR75Q8IWA0 830 aaKnown RBP10.83□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF341Q9BYN7 854 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 SAYSD1Q9NPB0 183 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 TRIM33Q9UPN9 1127 aa10.83□□□□□ -0.68
CLIP1-202ENST00000358808 SETBP1Q9Y6X0 1596 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms