RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NEK9Q8TD19 979 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 CCDC43Q96MW1 224 aaKnown RBP4.46□□□□□ -1.69
LIG4-201ENST00000356922 OSMRQ99650 979 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 PPP1R12CQ9BZL4 782 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 POLR3FQ9H1D9 316 aaPredicted RBP4.46□□□□□ -1.69
LIG4-201ENST00000356922 ZHX3Q9H4I2 956 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 SIP14410 1827 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 TRIOBPQ9H2D6 2365 aa4.46□□□□□ -1.69
LIG4-201ENST00000356922 KDM3AQ9Y4C1 1321 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 A0A0U1RQG5 324 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 NBNO60934 754 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 CAPN15O75808 1086 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 DGAT1O75907 488 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 GUCY2CP25092 1073 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 THPOP40225 353 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 ZNF484Q5JVG2 852 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 OTUD6AQ7L8S5 288 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 TMCO2Q7Z6W1 182 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 RTN4RL1Q86UN2 441 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 RNF149Q8NC42 400 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 ZBTB45Q96K62 511 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 FAM84AQ96KN4 292 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 NLRP4Q96MN2 994 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 STRA6Q9BX79 667 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 TNMDQ9H2S6 317 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 CLSTN2Q9H4D0 955 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 RTN4Q9NQC3 1192 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 KIAA1468Q9P260 1216 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 STK17AQ9UEE5 414 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 KPNA6O60684 536 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 PRPF6O94906 941 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 MUTP22033 750 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 HOXA11P31270 313 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 GPC3P51654 580 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MGAT3Q09327 533 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 COASYQ13057 564 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 AMHR2Q16671 573 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 KLHL40Q2TBA0 621 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 HERC4Q5GLZ8 1057 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 NECAB2Q7Z6G3 386 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 TMEM161BQ8NDZ6 487 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 SCFD1Q8WVM8 642 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 SLC7A3Q8WY07 619 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 PANK4Q9NVE7 773 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MAN1B1Q9UKM7 699 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 TBX21Q9UL17 535 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 NOC2LQ9Y3T9 749 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 SYCE3A1L190 88 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MEIS3P2A8K0S8 358 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 GOLGA6L22H0YM25 854 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MEFVO15553 781 aaPredicted RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 ZEB2O60315 1214 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MGEA5O60502 916 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 CABYRO75952 493 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 RPN1P04843 607 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 TXLNAP40222 546 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 AFF1P51825 1210 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 ASIC1P78348 528 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 DPCR1Q3MIW9 517 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 SEZ6Q53EL9 994 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 ODR4Q5SWX8 454 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 NT5DC1Q5TFE4 455 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 SLC39A4Q6P5W5 647 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 RBM43Q6ZSC3 357 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 ZNF720Q7Z2F6 126 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 CEP57L1Q8IYX8 460 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 MYCT1Q8N699 235 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 TIGD1Q96MW7 591 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 NTPCRQ9BSD7 190 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 FUCA2Q9BTY2 467 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 NOC4LQ9BVI4 516 aaKnown RBP4.46□□□□□ -1.7
LIG4-201ENST00000356922 ATP6V0A4Q9HBG4 840 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 AKT3Q9Y243 479 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 COL4A3BPQ9Y5P4 624 aa4.46□□□□□ -1.7
LIG4-201ENST00000356922 SMIM35A0A1B0GVV1 85 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 ANKRD63C9JTQ0 380 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 GTPBP6O43824 516 aaPredicted RBP4.45□□□□□ -1.7
LIG4-201ENST00000356922 KINO60870 393 aaKnown RBP4.45□□□□□ -1.7
LIG4-201ENST00000356922 PPP1R37O75864 691 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 ADSSP30520 456 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 PRCPP42785 496 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 C1orf53Q5VUE5 145 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 GAS2L3Q86XJ1 694 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 ANKLE1Q8NAG6 615 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 CPB2Q96IY4 423 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 FAM167AQ96KS9 214 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 KATNAL1Q9BW62 490 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 TMX1Q9H3N1 280 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 ZMYND8Q9ULU4 1186 aaPredicted RBP4.45□□□□□ -1.7
LIG4-201ENST00000356922 CDY2AQ9Y6F7 541 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 MYH11P35749 1972 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 TRIM49BA6NDI0 452 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 RRN3P2A6NIE6 340 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 CCDC169A6NNP5 214 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 PPP1R3GB7ZBB8 358 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 TGFB1I1O43294 461 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 ACRP10323 421 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 GHRP10912 638 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 PLS3P13797 630 aa4.45□□□□□ -1.7
LIG4-201ENST00000356922 CSF2RAP15509 400 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 334.4 ms