RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 USH1CQ9Y6N9 552 aa10.15□□□□□ -0.78
SMG6-202ENST00000354901 POLRMTO00411 1230 aaKnown RBP10.15□□□□□ -0.79
SMG6-202ENST00000354901 ABL2P42684 1182 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 ALDH5A1P51649 535 aaPredicted RBP10.15□□□□□ -0.79
SMG6-202ENST00000354901 ITGB3BPQ13352 177 aaPredicted RBP10.15□□□□□ -0.79
SMG6-202ENST00000354901 SEPT2Q15019 361 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 PPP4R3AQ6IN85 833 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 CYP2W1Q8TAV3 490 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 KLHL29Q96CT2 875 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 RGL1Q9NZL6 768 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 CEP72Q9P209 647 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 CNOT8Q9UFF9 292 aaKnown RBP10.15□□□□□ -0.79
SMG6-202ENST00000354901 TRIM33Q9UPN9 1127 aa10.15□□□□□ -0.79
SMG6-202ENST00000354901 ATXN2Q99700 1313 aaKnown RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 IGF2BP3O00425 579 aaKnown RBP eCLIP10.14□□□□□ -0.79
SMG6-202ENST00000354901 CHMP2AO43633 222 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 SNHG28P0DPA3 235 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 UBXN2AP68543 259 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 XRCC4Q13426 336 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 ZCWPW2Q504Y3 356 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 SLFN13Q68D06 897 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 TRMT1LQ7Z2T5 733 aaKnown RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 SFR1Q86XK3 245 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 MMGT1Q8N4V1 131 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 NT5C3AQ9H0P0 336 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 HOMER3Q9NSC5 361 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 PCDHB13Q9Y5F0 798 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 MYH7BA7E2Y1 1941 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 HMGB1P1B2RPK0 211 aaPredicted RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 hCG_1984214I3L0E3 225 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 CETN3O15182 167 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 SERPING1P05155 500 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 KCNA1Q09470 495 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 ASIC2Q16515 512 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 GPATCH4Q5T3I0 446 aaKnown RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 RNF220Q5VTB9 566 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 GJB7Q6PEY0 223 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 ZNF713Q8N859 430 aaPredicted RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 P2RX7Q99572 595 aaKnown RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 MLXIPLQ9NP71 852 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 ABCF3Q9NUQ8 709 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 DLGAP2Q9P1A6 1054 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 CORO1CQ9ULV4 474 aaPredicted RBP10.14□□□□□ -0.79
SMG6-202ENST00000354901 ATP6V0A2Q9Y487 856 aa10.14□□□□□ -0.79
SMG6-202ENST00000354901 CCT8L1PA6NM43 557 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 MYBP10242 640 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 EPB41P11171 864 aaKnown RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 ZNF76P36508 570 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CUL3Q13618 768 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 DBN1Q16643 649 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 ASTE1Q2TB18 679 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 CFAP221Q4G0U5 840 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 ARSHQ5FYA8 562 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CATSPER3Q86XQ3 398 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 PIGOQ8TEQ8 1089 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 TEKT1Q969V4 418 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.13□□□□□ -0.79
SMG6-202ENST00000354901 SAMD15Q9P1V8 674 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 HDAC9Q9UKV0 1011 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 DDTLA6NHG4 134 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 KCNK3O14649 394 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 AHCYL1O43865 530 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 RFC5P40937 340 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 ARHGAP4P98171 946 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 RNASELQ05823 741 aaKnown RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 ORC2Q13416 577 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 COBLL1Q53SF7 1204 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 TMEM154Q6P9G4 183 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 TRIM59Q8IWR1 403 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 PROM2Q8N271 834 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CASKIN2Q8WXE0 1202 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 TMX4Q9H1E5 349 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 DHX36Q9H2U1 1008 aaKnown RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 DNAJC18Q9H819 358 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 BCS1LQ9Y276 419 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 IGKV6D-41A0A0C4DH26 115 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 TRAPPC3O43617 180 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 FERP16591 822 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CASP4P49662 377 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CLK2P49760 499 aaKnown RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 LACTBP83111 547 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 PTK2Q05397 1052 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 SLC5A9Q2M3M2 681 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 CERKLQ49MI3 558 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 IQCDQ96DY2 449 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 REEP2Q9BRK0 252 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 BHMT2Q9H2M3 363 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 EBF2Q9HAK2 575 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 ARMCX3Q9UH62 379 aaPredicted RBP10.13□□□□□ -0.79
SMG6-202ENST00000354901 AGAP1Q9UPQ3 857 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 LTBP1Q14766 1721 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 KDM3AQ9Y4C1 1321 aa10.13□□□□□ -0.79
SMG6-202ENST00000354901 SSU72P8A0A1W2PR75 194 aa10.12□□□□□ -0.79
SMG6-202ENST00000354901 UBOX5O94941 541 aa10.12□□□□□ -0.79
SMG6-202ENST00000354901 GCNT3O95395 438 aa10.12□□□□□ -0.79
SMG6-202ENST00000354901 APBA3O96018 575 aa10.12□□□□□ -0.79
SMG6-202ENST00000354901 ATP2A2P16615 1042 aaKnown RBP10.12□□□□□ -0.79
SMG6-202ENST00000354901 ROR2Q01974 943 aaKnown RBP10.12□□□□□ -0.79
SMG6-202ENST00000354901 APOBEC3HQ6NTF7 200 aaKnown RBP10.12□□□□□ -0.79
SMG6-202ENST00000354901 RPS6KC1Q96S38 1066 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms