RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ACTRT1Q8TDG2 376 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 PCIF1Q9H4Z3 704 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 RAVER2Q9HCJ3 691 aaKnown RBP23.68■■□□□ 1.38
SHMT1-202ENST00000352886 GOLGA6AQ9NYA3 693 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 UBIAD1Q9Y5Z9 338 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 TISP43B9A030 160 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 FAM153BP0C7A2 387 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 MTMR1Q13613 665 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 FAM153CQ494X1 144 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 PCNX4Q63HM2 1172 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 FAM153AQ9UHL3 310 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 HSF2BPO75031 334 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 ZBTB48P10074 688 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-202ENST00000352886 RASA3Q14644 834 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 ARHGAP44Q17R89 818 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 FAM76AQ8TAV0 307 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 CASKIN2Q8WXE0 1202 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 SH3GL2Q99962 352 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 SH2D3AQ9BRG2 576 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 MYOZ2Q9NPC6 264 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 KRT13P13646 458 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 QARSP47897 775 aaKnown RBP23.67■■□□□ 1.38
SHMT1-202ENST00000352886 DLG4P78352 724 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 MYBPC2Q14324 1141 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 ALS2CLQ60I27 953 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 PHLDB3Q6NSJ2 640 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 SYCE1Q8N0S2 351 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 LPAR1Q92633 364 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 RUFY1Q96T51 708 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 SYT11Q9BT88 431 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 TMEM206Q9H813 350 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 OSGEPQ9NPF4 335 aa23.67■■□□□ 1.38
SHMT1-202ENST00000352886 DBR1Q9UK59 544 aaKnown RBP23.67■■□□□ 1.38
SHMT1-202ENST00000352886 EIF2AK2P19525 551 aaKnown RBP23.66■■□□□ 1.38
SHMT1-202ENST00000352886 NPEPPSP55786 919 aa23.66■■□□□ 1.38
SHMT1-202ENST00000352886 TRADDQ15628 312 aa23.66■■□□□ 1.38
SHMT1-202ENST00000352886 SYTL5Q8TDW5 730 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-202ENST00000352886 SCFD2Q8WU76 684 aa23.66■■□□□ 1.38
SHMT1-202ENST00000352886 SUCLA2Q9P2R7 463 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-202ENST00000352886 STXBP5LQ9Y2K9 1186 aa23.66■■□□□ 1.38
SHMT1-202ENST00000352886 PGRMC1O00264 195 aaKnown RBP23.65■■□□□ 1.38
SHMT1-202ENST00000352886 RPS6KA5O75582 802 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 CCDC172P0C7W6 258 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 SPP2Q13103 211 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 NT5DC3Q86UY8 548 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 AP1M1Q9BXS5 423 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 VPS33BQ9H267 617 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 SLC38A10Q9HBR0 1119 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 CWC15Q9P013 229 aaKnown RBP23.65■■□□□ 1.38
SHMT1-202ENST00000352886 NOC2LQ9Y3T9 749 aaKnown RBP23.65■■□□□ 1.38
SHMT1-202ENST00000352886 OPA1O60313 960 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 LRRN2O75325 713 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 ABCB4P21439 1286 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 GHRHRQ02643 423 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 PDE4CQ08493 712 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 TRMT1LQ7Z2T5 733 aaKnown RBP23.65■■□□□ 1.38
SHMT1-202ENST00000352886 FMNL3Q8IVF7 1028 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 LMO3Q8TAP4 145 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 TAAR1Q96RJ0 339 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.65■■□□□ 1.389e-6■□□□□ 9.3
SHMT1-202ENST00000352886 CBWD1Q9BRT8 395 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 BCS1LQ9Y276 419 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 EMSYQ7Z589 1322 aa23.65■■□□□ 1.38
SHMT1-202ENST00000352886 TMEM150BA6NC51 233 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 GOLGA8KD6RF30 607 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 MAPTP10636 758 aaKnown RBP23.64■■□□□ 1.38
SHMT1-202ENST00000352886 PLS3P13797 630 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 YWHABP31946 246 aaKnown RBP23.64■■□□□ 1.38
SHMT1-202ENST00000352886 GUCY2FP51841 1108 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 ALCAMQ13740 583 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 INTS8Q75QN2 995 aaKnown RBP23.64■■□□□ 1.38
SHMT1-202ENST00000352886 SLC35G2Q8TBE7 412 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 CCDC43Q96MW1 224 aaKnown RBP23.64■■□□□ 1.38
SHMT1-202ENST00000352886 ACCSQ96QU6 501 aa23.64■■□□□ 1.38
SHMT1-202ENST00000352886 FAM170AA1A519 330 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 TMEM253P0C7T8 217 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 RPS6P62753 249 aaKnown RBP23.64■■□□□ 1.37
SHMT1-202ENST00000352886 CTNNBL1Q8WYA6 563 aaPredicted RBP23.64■■□□□ 1.37
SHMT1-202ENST00000352886 RFFLQ8WZ73 363 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 ZIM3Q96PE6 472 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 KIAA1683Q9H0B3 1180 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 SEPT11Q9NVA2 429 aaKnown RBP23.64■■□□□ 1.37
SHMT1-202ENST00000352886 NCANO14594 1321 aa23.64■■□□□ 1.37
SHMT1-202ENST00000352886 FOXN3O00409 490 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-202ENST00000352886 TNFAIP3P21580 790 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 VAMP7P51809 220 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 PPFIA1Q13136 1202 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 LRRC31Q6UY01 552 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 CALR3Q96L12 384 aaKnown RBP23.63■■□□□ 1.37
SHMT1-202ENST00000352886 TBC1D22BQ9NU19 505 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 IGSF9BQ9UPX0 1349 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 BUB1BO60566 1050 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-202ENST00000352886 IVLP07476 585 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 MYCLP12524 364 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-202ENST00000352886 RFX1P22670 979 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 PGM5Q15124 567 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 UGCGQ16739 394 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 HES6Q96HZ4 224 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 DAAM1Q9Y4D1 1078 aa23.63■■□□□ 1.37
SHMT1-202ENST00000352886 PPP3CAQ08209 521 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms