RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 OLIG1Q8TAK6 271 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ZKSCAN4Q969J2 545 aaPredicted RBP16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 INPP4AQ96PE3 977 aaPredicted RBP16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 STK33Q9BYT3 514 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ACBD3Q9H3P7 528 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 PXMP2Q9NR77 195 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 TBC1D22BQ9NU19 505 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ZC3H4Q9UPT8 1303 aaKnown RBP16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 LRRN2O75325 713 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 PLS3P13797 630 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 NPEPPSP55786 919 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ARHGAP44Q17R89 818 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ARHGEF16Q5VV41 709 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 LRRC57Q8N9N7 239 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 APEX2Q9UBZ4 518 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 TMCO5BA8MYB1 307 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 KCNK3O14649 394 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 H2AFZP0C0S5 128 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 RPS6KA1Q15418 735 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 H2AFVQ71UI9 128 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 RIN2Q8WYP3 895 aaPredicted RBP16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 RNF14Q9UBS8 474 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 CNOT7Q9UIV1 285 aaKnown RBP16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 SLC16A4O15374 487 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 RPS12P25398 132 aaKnown RBP16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 ANXA13P27216 316 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 BAATQ14032 418 aaPredicted RBP16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 PHLDB3Q6NSJ2 640 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 SND1Q7KZF4 910 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 TPCN2Q8NHX9 752 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 FAM71BQ8TC56 605 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 ACCSQ96QU6 501 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 TMEM206Q9H813 350 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 RNF146Q9NTX7 359 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 TCEAL9Q9UHQ7 104 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 EMSYQ7Z589 1322 aa16.17■□□□□ 0.18
CLCNKA-201ENST00000331433 ZSCAN5CA6NGD5 496 aaPredicted RBP16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 TULP1O00294 542 aaPredicted RBP16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 KIF4AO95239 1232 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 LYPLA2O95372 231 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 SYF2O95926 243 aaKnown RBP16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 KRT13P13646 458 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 AARSP49588 968 aaKnown RBP eCLIP16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 PEX3P56589 373 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 HAUS6Q7Z4H7 955 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 SLC30A5Q8TAD4 765 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 LMO3Q8TAP4 145 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 TAF4BQ92750 862 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 MAP3K20Q9NYL2 800 aaKnown RBP16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 GLI1P08151 1106 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 LMAN1P49257 510 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 GALCP54803 685 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 BACE1P56817 501 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 PPP3CAQ08209 521 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 FAM102BQ5T8I3 360 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 C4orf19Q8IY42 314 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 KRT12Q99456 494 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 MED4Q9NPJ6 270 aa16.16■□□□□ 0.18
CLCNKA-201ENST00000331433 ESYT3A0FGR9 886 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 WDR64B1ANS9 1081 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 GGCXP38435 758 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 GCLMP48507 274 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 PSMC5P62195 406 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 IFI16Q16666 785 aaKnown RBP16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 XKR9Q5GH70 373 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 EXOC4Q96A65 974 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 WRNIP1Q96S55 665 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 KIFC3Q9BVG8 833 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 GINM1Q9NU53 330 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 HSPBP1Q9NZL4 362 aa16.15■□□□□ 0.18
CLCNKA-201ENST00000331433 FOXN3O00409 490 aaPredicted RBP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 RNF40O75150 1001 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 MAPTP10636 758 aaKnown RBP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 VAMP7P51809 220 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 HMGCS2P54868 508 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 MYBPC2Q14324 1141 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 SNRNP48Q6IEG0 339 aaKnown RBP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 INTS8Q75QN2 995 aaKnown RBP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 PALB2Q86YC2 1186 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 PLEKHO2Q8TD55 490 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 RUBCNQ92622 972 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 OSGEPQ9NPF4 335 aa16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.14■□□□□ 0.18
CLCNKA-201ENST00000331433 PARP14Q460N5 1801 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 GOLGA8IPA6NC78 632 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 GOLGA8JA6NMD2 632 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 ABCB4P21439 1286 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 JAK3P52333 1124 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 GTF2BQ00403 316 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 ALCAMQ13740 583 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 SCYL3Q8IZE3 742 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 USP38Q8NB14 1042 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 XXYLT1Q8NBI6 393 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 SYT11Q9BT88 431 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 SEPT11Q9NVA2 429 aaKnown RBP16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 TAS2R14Q9NYV8 317 aa16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 BRCA1P38398 1863 aaKnown RBP16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 COL11A1P12107 1806 aaPredicted RBP16.14■□□□□ 0.17
CLCNKA-201ENST00000331433 IGSF9BQ9UPX0 1349 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms