RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C10orf71Q711Q0 1435 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 A0A1B0GW55 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 H3BRJ5 948 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TMEM253P0C7T8 217 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L2P0CJ85 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L3P0CJ86 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L4P0CJ87 422 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L5P0CJ88 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L6P0CJ89 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4L7P0CJ90 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 KRT4P19013 534 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 PRCPP42785 496 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 SLC44A4Q53GD3 710 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 BSPRYQ5W0U4 402 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 CAPRIN2Q6IMN6 1127 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 TRIM59Q8IWR1 403 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 UNC45BQ8IWX7 931 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 RNF217Q8TC41 542 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 RFFLQ8WZ73 363 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 RPS6KC1Q96S38 1066 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 CCDC90BQ9GZT6 254 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 SLC40A1Q9NP59 571 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DUX4Q9UBX2 424 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8QA0A0J9YX86 632 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8OA6NCC3 632 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8NF8WBI6 632 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TRAF5O00463 557 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ADCY7P51828 1080 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 RAB14P61106 215 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 IL9RQ01113 521 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 DDB1Q16531 1140 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 FAM83BQ5T0W9 1011 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 CYB5R4Q7L1T6 521 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 FUKQ8N0W3 1084 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 HIPK4Q8NE63 616 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 MIS12Q9H081 205 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ITGB1BP2Q9UKP3 347 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ANGPTL2Q9UKU9 493 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 PLAAQ9Y263 795 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 WDR91A4D1P6 747 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 AHCYL1O43865 530 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TSPAN9O75954 239 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 SLC12A1Q13621 1099 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 MEI1Q5TIA1 1274 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TYW1BQ6NUM6 668 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 THOC1Q96FV9 657 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 MRPS26Q9BYN8 205 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 PABPC3Q9H361 631 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 CHCHD3Q9NX63 227 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 SMG5Q9UPR3 1016 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 CAMTA1Q9Y6Y1 1673 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 B4DLN1 442 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 GSTA4O15217 222 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 MGRN1O60291 552 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 XRCC5P13010 732 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 ARHGDIAP52565 204 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ENPEPQ07075 957 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 MTF1Q14872 753 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 NLRP10Q86W26 655 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 KRT73Q86Y46 540 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 CCDC105Q8IYK2 499 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TNFRSF25Q93038 417 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ZIM3Q96PE6 472 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 TBC1D7Q9P0N9 293 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 AXIN2Q9Y2T1 843 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 CTNND1O60716 968 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 DDHD2O94830 711 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 SAT1P21673 171 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 SLC18A1P54219 525 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 HERVK_113P62684 666 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 TCEAL1Q15170 157 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 NFIL3Q16649 462 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 PARP6Q2NL67 630 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 HIBCHQ6NVY1 386 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 PODNQ7Z5L7 613 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 INPP5DQ92835 1189 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 CCDC85AQ96PX6 553 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 VPS54Q9P1Q0 977 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ANKIB1Q9P2G1 1089 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 TNS2Q63HR2 1409 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 H0Y3Z8 333 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ANGPT1Q15389 498 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 DCAF17Q5H9S7 520 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 MFSD5Q6N075 450 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 NBPF5PQ86XG9 351 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 RNF169Q8NCN4 708 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 RFWD2Q8NHY2 731 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 LRRC8CQ8TDW0 803 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 STAMBPL1Q96FJ0 436 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 INPP4AQ96PE3 977 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 KLHL31Q9H511 634 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 BARHL2Q9NY43 387 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 CAB39Q9Y376 341 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 TTLL3Q9Y4R7 772 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 IPO5O00410 1097 aaKnown RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 TRIM16O95361 564 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 TPP2P29144 1249 aaPredicted RBP6.84□□□□□ -1.31
VPS35-201ENST00000299138 SLC12A2P55011 1212 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 PLS1Q14651 629 aa6.84□□□□□ -1.31
VPS35-201ENST00000299138 ALKBH8Q96BT7 664 aaKnown RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms