RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PEX26Q7Z412 305 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 DAAM2Q86T65 1068 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 MCF2L2Q86YR7 1114 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 AFAP1L1Q8TED9 768 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 TEPSINQ96N21 525 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 LARSQ9P2J5 1176 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 APEX2Q9UBZ4 518 aa19.96■□□□□ 0.79
SHKBP1-201ENST00000291842 RAD51CO43502 376 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 QARSP47897 775 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 IFI16Q16666 785 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 PCNX4Q63HM2 1172 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 IFT20Q8IY31 132 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 METTL13Q8N6R0 699 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA6L1Q8N7Z2 621 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC30A5Q8TAD4 765 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 RUBCNQ92622 972 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 WNK4Q96J92 1243 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 CCDC43Q96MW1 224 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC38A10Q9HBR0 1119 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 CALCOCO1Q9P1Z2 691 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 EMSYQ7Z589 1322 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 YWHABP31946 246 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 GUCY2FP51841 1108 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 PPP2R5AQ15172 486 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 PLA2G4FQ68DD2 849 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 NSMFQ6X4W1 530 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 PALB2Q86YC2 1186 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 NEK9Q8TD19 979 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 GDF3Q9NR23 364 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 TAS2R14Q9NYV8 317 aa19.95■□□□□ 0.78
SHKBP1-201ENST00000291842 FOXN3O00409 490 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 ACTN2P35609 894 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 GCLMP48507 274 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 NPEPPSP55786 919 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 PGM5Q15124 567 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 EMBQ6PCB8 327 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA5Q8TBA6 731 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 CASKIN2Q8WXE0 1202 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 IGSF9BQ9UPX0 1349 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 TESPA1A2RU30 521 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 BACH1O14867 736 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC16A4O15374 487 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 KRT13P13646 458 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 VCAM1P19320 739 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 PPP3CAQ08209 521 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 SAMD7Q7Z3H4 446 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 TRERF1Q96PN7 1200 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 KIAA1683Q9H0B3 1180 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 FZD1Q9UP38 647 aa19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 CTDP1Q9Y5B0 961 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA8IPA6NC78 632 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA8JA6NMD2 632 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 PEX3P56589 373 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC9A9Q8IVB4 645 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 LMO3Q8TAP4 145 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC35G2Q8TBE7 412 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 JDP2Q8WYK2 163 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 LPAR1Q92633 364 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 RMDN3Q96TC7 470 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 RPAP3Q9H6T3 665 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 UBE2TQ9NPD8 197 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 PLS3P13797 630 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 VAMP7P51809 220 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 LEKR1Q6ZMV7 388 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 HAUS6Q7Z4H7 955 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 ARHGEF19Q8IW93 802 aa19.93■□□□□ 0.78
SHKBP1-201ENST00000291842 RGPD3A6NKT7 1758 aaPredicted RBP19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 RGPD4Q7Z3J3 1758 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 LMNB1P20700 586 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TNFAIP3P21580 790 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 ANXA13P27216 316 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TNFRSF8P28908 595 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TNNC1P63316 161 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 FAM102BQ5T8I3 360 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 POTEAQ6S8J7 498 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 SLC20A1Q8WUM9 679 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 CAVIN3Q969G5 261 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 ACCSQ96QU6 501 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 KIFC3Q9BVG8 833 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TMEM59LQ9UK28 342 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 DBR1Q9UK59 544 aaKnown RBP19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 NOC2LQ9Y3T9 749 aaKnown RBP19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 RIPK3Q9Y572 518 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA6CA6NDK9 693 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 BUB1BO60566 1050 aaPredicted RBP19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 CCNE2O96020 404 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA6DP0CG33 693 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 NIPA1Q7RTP0 329 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 NT5DC3Q86UY8 548 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 PLEKHO2Q8TD55 490 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 ARHGEF26Q96DR7 871 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 PBKQ96KB5 322 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 SYT11Q9BT88 431 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TMEM206Q9H813 350 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 GOLGA6AQ9NYA3 693 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 HSPBP1Q9NZL4 362 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 TCEAL9Q9UHQ7 104 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 PPP1R9AQ9ULJ8 1098 aa19.92■□□□□ 0.78
SHKBP1-201ENST00000291842 ZBTB48P10074 688 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-201ENST00000291842 ITGA4P13612 1032 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms