RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 AP5S1Q9NUS5 200 aa5.35□□□□□ -1.55
CD44-202ENST00000278385 MINPP1Q9UNW1 487 aa5.35□□□□□ -1.55
CD44-202ENST00000278385 PHLPP1O60346 1717 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 COL16A1Q07092 1604 aaPredicted RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 EIF3AQ14152 1382 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 SPATA31A3Q5VYP0 1347 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 USP2O75604 605 aaPredicted RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 FARP2O94887 1054 aaPredicted RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 KCNH1O95259 989 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 CNOT4O95628 575 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 IGHDP01880 384 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 PF4V1P10720 104 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 HSD3B1P14060 373 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 HOXC13P31276 330 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 TMPRSS15P98073 1019 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 TMEM62Q0P6H9 643 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 LAPTM5Q13571 262 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 KIF22Q14807 665 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 PCBP1Q15365 356 aaKnown RBP eCLIP5.34□□□□□ -1.55
CD44-202ENST00000278385 PKN3Q6P5Z2 889 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 CABP7Q86V35 215 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 HSCBQ8IWL3 235 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 ARHGEF39Q8N4T4 335 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 OTUD6BQ8N6M0 293 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 SPATA5Q8NB90 893 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 COG1Q8WTW3 980 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 ATRIPQ8WXE1 791 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 LINC01599Q8WXQ3 324 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 TBC1D20Q96BZ9 403 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 IPO9Q96P70 1041 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 NAA15Q9BXJ9 866 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 MRPL4Q9BYD3 311 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 ANLNQ9NQW6 1124 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 TRMT13Q9NUP7 481 aaKnown RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 CGGBP1Q9UFW8 167 aaPredicted RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 TRPC5Q9UL62 973 aaPredicted RBP5.34□□□□□ -1.55
CD44-202ENST00000278385 TTLL3Q9Y4R7 772 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 BACE2Q9Y5Z0 518 aa5.34□□□□□ -1.55
CD44-202ENST00000278385 PPLO60437 1756 aa5.34□□□□□ -1.56
CD44-202ENST00000278385 LRP6O75581 1613 aa5.34□□□□□ -1.56
CD44-202ENST00000278385 ANKARQ7Z5J8 1434 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 C2orf71A6NGG8 1288 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SHOXO15266 292 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 TLR5O60602 858 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 HMMRO75330 724 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 BAIAP3O94812 1187 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SNUPNO95149 360 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 APPP05067 770 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 CAPN3P20807 821 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 OAS2P29728 719 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 CTSKP43235 329 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 MAPK9P45984 424 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 KCNJ6P48051 423 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 MLANAQ16655 118 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SLC10A6Q3KNW5 377 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 TUBB8Q3ZCM7 444 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 ATP13A4Q4VNC1 1196 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 TMEM240Q5SV17 173 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 INTS11Q5TA45 600 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 RPAINQ86UA6 219 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 MYLK4Q86YV6 388 aaPredicted RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 CPA6Q8N4T0 437 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 ACRBPQ8NEB7 543 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 KLHL6Q8WZ60 621 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 CCDC140Q96MF4 163 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 AIFM3Q96NN9 605 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 CENPOQ9BU64 300 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 ISCA1Q9BUE6 129 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 MENTQ9BUN1 341 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SLC12A9Q9BXP2 914 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SLC13A1Q9BZW2 595 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 EPB41L4BQ9H329 900 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 CHMP4BQ9H444 224 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 CD248Q9HCU0 757 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 DCP1AQ9NPI6 582 aaPredicted RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 SMYD2Q9NRG4 433 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SAP30BPQ9UHR5 308 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 FBXO10Q9UK96 956 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 AFG3L2Q9Y4W6 797 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 LRRFIP2Q9Y608 721 aaKnown RBP5.33□□□□□ -1.56
CD44-202ENST00000278385 CDC42BPGQ6DT37 1551 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 DLC1Q96QB1 1528 aa5.33□□□□□ -1.56
CD44-202ENST00000278385 SBNO1A3KN83 1393 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 GPRASP1Q5JY77 1395 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 SETD1AO15047 1707 aaKnown RBP5.32□□□□□ -1.56
CD44-202ENST00000278385 TMEM82A0PJX8 343 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 OR14I1A6ND48 311 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 STXBP3O00186 592 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 SUSD5O60279 629 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 TMCC2O75069 709 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 DNAJC8O75937 253 aaPredicted RBP5.32□□□□□ -1.56
CD44-202ENST00000278385 ASGR2P07307 311 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 ZKSCAN1P17029 563 aaPredicted RBP5.32□□□□□ -1.56
CD44-202ENST00000278385 PAMP19021 973 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 PSMA3P25788 255 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 TRHRP34981 398 aaPredicted RBP5.32□□□□□ -1.56
CD44-202ENST00000278385 STT3AP46977 705 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 ERVFC1P60507 584 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 CYP4F8P98187 520 aa5.32□□□□□ -1.56
CD44-202ENST00000278385 ROR1Q01973 937 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms