RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 F8VZ95 297 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 SEC24CP53992 1094 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 XKR9Q5GH70 373 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 ARHGEF19Q8IW93 802 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 ZNF233A6NK53 670 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 PRLRP16471 622 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 MARCKSL1P49006 195 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 IRAK1P51617 712 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 TNNC1P63316 161 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 DPY19L2P1Q6NXN4 242 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 PI4K2AQ9BTU6 479 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 PLAAQ9Y263 795 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 CEP350Q5VT06 3117 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 DPEP1P16444 411 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 SOX5P35711 763 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 MARSP56192 900 aaKnown RBP18.05■□□□□ 0.48
VPS54-201ENST00000272322 SLC30A5Q8TAD4 765 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 SYN2Q92777 582 aaPredicted RBP18.05■□□□□ 0.48
VPS54-201ENST00000272322 SLX4Q8IY92 1834 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 PAK2Q13177 524 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 ITGB3BPQ13352 177 aaPredicted RBP18.05■□□□□ 0.48
VPS54-201ENST00000272322 FAM151AQ8WW52 585 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 VIPAS39Q9H9C1 493 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 LRRC4CQ9HCJ2 640 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 PTPN22Q9Y2R2 807 aa18.05■□□□□ 0.48
VPS54-201ENST00000272322 AARSP49588 968 aaKnown RBP eCLIP18.04■□□□□ 0.481e-7■■■■■ 41.2
VPS54-201ENST00000272322 MOXD1Q6UVY6 613 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 CBWD2Q8IUF1 395 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 TTLL6Q8N841 843 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 DHX38Q92620 1227 aaKnown RBP18.04■□□□□ 0.48
VPS54-201ENST00000272322 PPANQ9NQ55 473 aaKnown RBP18.04■□□□□ 0.48
VPS54-201ENST00000272322 WNT10BO00744 389 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 RPS6P62753 249 aaKnown RBP18.04■□□□□ 0.48
VPS54-201ENST00000272322 SPP2Q13103 211 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 DAB2IPQ5VWQ8 1189 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 FIZ1Q96SL8 496 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 HERC5Q9UII4 1024 aaKnown RBP18.04■□□□□ 0.48
VPS54-201ENST00000272322 CAP2P40123 477 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 MTMR1Q13613 665 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 DLK2Q6UY11 383 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 C7orf43Q8WVR3 580 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 AMFRQ9UKV5 643 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 ATP8A1Q9Y2Q0 1164 aa18.04■□□□□ 0.48
VPS54-201ENST00000272322 PGRMC1O00264 195 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 CYP26A1O43174 497 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 FTLP02792 175 aaPredicted RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 HARSP12081 509 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 HDLBPQ00341 1268 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 MTMR2Q13614 643 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 SLC5A5Q92911 643 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 BFSP1Q12934 665 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 LLGL2Q6P1M3 1020 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 EMBQ6PCB8 327 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 MXRA8Q9BRK3 442 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 LARSQ9P2J5 1176 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 VIL1P09327 827 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 GAP43P17677 238 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 CTNNA1P35221 906 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 CXCL9Q07325 125 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 BTNL9Q6UXG8 535 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 SRLQ86TD4 932 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 DHX37Q8IY37 1157 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 KRT35Q92764 455 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 ZKSCAN4Q969J2 545 aaPredicted RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 RNPC3Q96LT9 517 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 OLFML3Q9NRN5 406 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 DNAJC17Q9NVM6 304 aaKnown RBP18.03■□□□□ 0.48
VPS54-201ENST00000272322 TSKSQ9UJT2 592 aa18.03■□□□□ 0.48
VPS54-201ENST00000272322 OPA1O60313 960 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 ATP2C2O75185 946 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 SGPL1O95470 568 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 GJC1P36383 396 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 LIG3P49916 1009 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 MRPS9P82933 396 aaKnown RBP18.02■□□□□ 0.48
VPS54-201ENST00000272322 STYK1Q6J9G0 422 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 CYFIP1Q7L576 1253 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 HAUS6Q7Z4H7 955 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 RMDN3Q96TC7 470 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 FAM118BQ9BPY3 351 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 APEX2Q9UBZ4 518 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 COG5Q9UP83 839 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 SNX24Q9Y343 169 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 RIPK3Q9Y572 518 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 FERP16591 822 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 TMOD1P28289 359 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 KCNJ1P48048 391 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 DHX9Q08211 1270 aaKnown RBP18.02■□□□□ 0.48
VPS54-201ENST00000272322 SLC15A2Q16348 729 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 RPUSD2Q8IZ73 545 aaKnown RBP18.02■□□□□ 0.48
VPS54-201ENST00000272322 LRRC57Q8N9N7 239 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 ERVK-5Q9HDB9 667 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 PSD3Q9NYI0 1048 aa18.02■□□□□ 0.48
VPS54-201ENST00000272322 LY75O60449 1722 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 NDUFAB1O14561 156 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 PLSCR1O15162 318 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 ZBTB7AO95365 584 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 CCDC25Q86WR0 208 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 ZNF668Q96K58 619 aaPredicted RBP18.02■□□□□ 0.47
VPS54-201ENST00000272322 TUFT1Q9NNX1 390 aa18.02■□□□□ 0.47
VPS54-201ENST00000272322 FEZ2Q9UHY8 353 aaPredicted RBP18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms