RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SSU72P8A0A1W2PR75 194 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 ADRA2BP18089 450 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 OSBPP22059 807 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 KRT39Q6A163 491 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 CIAPIN1Q6FI81 312 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 GLYCTKQ8IVS8 523 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 RTKN2Q8IZC4 609 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 SIX6OS1Q8N1H7 587 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 SYT2Q8N9I0 419 aaPredicted RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 BANK1Q8NDB2 785 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.51□□□□□ -0.57
CD44-201ENST00000263398 C11orf70Q9BRQ4 267 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 TDRD3Q9H7E2 651 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 ZWILCHQ9H900 591 aa11.51□□□□□ -0.57
CD44-201ENST00000263398 TPX2Q9ULW0 747 aaKnown RBP11.51□□□□□ -0.57
CD44-201ENST00000263398 PDXKO00764 312 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 WDR46O15213 610 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 SLC16A4O15374 487 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 KRT38O76015 456 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 SRGNP10124 158 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 DPYDQ12882 1025 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 NR1I3Q14994 352 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ANKRD20A4Q4UJ75 823 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ANKRD20A8PQ5CZ79 823 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ANKRD20A2Q5SQ80 823 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ANKRD20A1Q5TYW2 823 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 METTL23Q86XA0 190 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 NSUN4Q96CB9 384 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 DDX27Q96GQ7 796 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 NUDCD1Q96RS6 583 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 STRIP2Q9ULQ0 834 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 PXDNLA1KZ92 1463 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 CLGNO14967 610 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 RHOBTB3O94955 611 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 SFNP31947 248 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 FXR1P51114 621 aaKnown RBP eCLIP11.5□□□□□ -0.57
CD44-201ENST00000263398 THOC5Q13769 683 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 MAPK6Q16659 721 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ZNF394Q53GI3 561 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 SPOPLQ6IQ16 392 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 FAM47EQ6ZV65 393 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 KRT27Q7Z3Y8 459 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 MAML1Q92585 1016 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 INTS2Q9H0H0 1204 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 SPATS2LQ9NUQ6 558 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 FEM1BQ9UK73 627 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ANGPTL2Q9UKU9 493 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 NOC2LQ9Y3T9 749 aaKnown RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 ABCB11O95342 1321 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ARHGEF37A1IGU5 675 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 DENND3A2RUS2 1198 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 COPEO14579 308 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 TTI1O43156 1089 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 TMEM270Q6UE05 265 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 CRLF3Q8IUI8 442 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 CFAP36Q96G28 342 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 FAM167AQ96KS9 214 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 WNT8AQ9H1J5 351 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 VIPAS39Q9H9C1 493 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 FAM196BA6NMK8 535 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 MAP3K7O43318 606 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 BRAFP15056 766 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 ENOSF1Q7L5Y1 443 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 RPAINQ86UA6 219 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 TRIM59Q8IWR1 403 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 TC2NQ8N9U0 490 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 PDZD8Q8NEN9 1154 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 FAF2Q96CS3 445 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 NUP85Q9BW27 656 aa11.5□□□□□ -0.57
CD44-201ENST00000263398 PACSIN2Q9UNF0 486 aaPredicted RBP11.5□□□□□ -0.57
CD44-201ENST00000263398 MYO3BQ8WXR4 1341 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 FAM205CA6NFA0 338 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 TTC36A6NLP5 189 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 FDPSP14324 419 aaKnown RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 ZNF18P17022 549 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 TBXAS1P24557 533 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 TMPRSS15P98073 1019 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 DHX34Q14147 1143 aaKnown RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 SBK1Q52WX2 424 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 BEND6Q5SZJ8 279 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 AP1ARQ63HQ0 302 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 EPM2AIP1Q7L775 607 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.49□□□□□ -0.57
CD44-201ENST00000263398 DEPDC1BQ8WUY9 529 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 TTC17Q96AE7 1141 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 SERPINI1Q99574 410 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 AP5M1Q9H0R1 490 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 FAF1Q9UNN5 650 aaPredicted RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 GGPS1O95749 300 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 CHGBP05060 677 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 CSF1RP07333 972 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 ANXA13P27216 316 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 SOX5P35711 763 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 ANTXR2P58335 489 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 SLC18A3Q16572 532 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 FAM213AQ9BRX8 229 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 SLC12A6Q9UHW9 1150 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 ZC3H13Q5T200 1668 aaKnown RBP11.49□□□□□ -0.57
CD44-201ENST00000263398 A0A0G2JND7 137 aa11.49□□□□□ -0.57
CD44-201ENST00000263398 EYA4O95677 639 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms