RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 GGT6Q6P531 493 aa18.31■□□□□ 0.52
LINC00339-213ENST00000642137 SIGLEC1Q9BZZ2 1709 aa18.3■□□□□ 0.52
LINC00339-213ENST00000642137 TRIM52Q96A61 297 aa18.29■□□□□ 0.52
LINC00339-213ENST00000642137 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.28■□□□□ 0.522e-8■■■□□ 14.6
LINC00339-213ENST00000642137 RNF17Q9BXT8 1623 aaKnown RBP18.27■□□□□ 0.52
LINC00339-213ENST00000642137 NUP155O75694 1391 aa18.27■□□□□ 0.51
LINC00339-213ENST00000642137 DEPDC5O75140 1603 aa18.27■□□□□ 0.51
LINC00339-213ENST00000642137 KANK1Q14678 1352 aa18.26■□□□□ 0.51
LINC00339-213ENST00000642137 UNC13BO14795 1591 aa18.25■□□□□ 0.51
LINC00339-213ENST00000642137 MLECQ14165 292 aa18.25■□□□□ 0.51
LINC00339-213ENST00000642137 MROH1Q8NDA8 1641 aa18.23■□□□□ 0.51
LINC00339-213ENST00000642137 PRDM15P57071 1507 aaPredicted RBP18.23■□□□□ 0.51
LINC00339-213ENST00000642137 WASHC2CQ9Y4E1 1318 aa18.23■□□□□ 0.51
LINC00339-213ENST00000642137 KDM5DQ9BY66 1539 aa18.22■□□□□ 0.51
LINC00339-213ENST00000642137 VWDEQ8N2E2 1590 aa18.21■□□□□ 0.51
LINC00339-213ENST00000642137 FAM135AQ9P2D6 1515 aa18.2■□□□□ 0.5
LINC00339-213ENST00000642137 MPHOSPH9Q99550 1183 aa18.2■□□□□ 0.5
LINC00339-213ENST00000642137 ESF1Q9H501 851 aaKnown RBP18.2■□□□□ 0.5
LINC00339-213ENST00000642137 IQGAP3Q86VI3 1631 aa18.2■□□□□ 0.5
LINC00339-213ENST00000642137 SLC4A1APQ9BWU0 796 aaKnown RBP18.19■□□□□ 0.5
LINC00339-213ENST00000642137 LMTK2Q8IWU2 1503 aa18.18■□□□□ 0.5
LINC00339-213ENST00000642137 PZPP20742 1482 aa18.17■□□□□ 0.5
LINC00339-213ENST00000642137 CNTLNQ9NXG0 1405 aa18.16■□□□□ 0.5
LINC00339-213ENST00000642137 ZC3H13Q5T200 1668 aaKnown RBP18.16■□□□□ 0.5
LINC00339-213ENST00000642137 ABCC3O15438 1527 aa18.16■□□□□ 0.5
LINC00339-213ENST00000642137 ADAMTSL3P82987 1691 aa18.15■□□□□ 0.5
LINC00339-213ENST00000642137 CEP152O94986 1710 aa18.15■□□□□ 0.5
LINC00339-213ENST00000642137 TET3O43151 1660 aa18.13■□□□□ 0.49
LINC00339-213ENST00000642137 PKD2Q13563 968 aa18.13■□□□□ 0.49
LINC00339-213ENST00000642137 CLTCQ00610 1675 aaKnown RBP18.12■□□□□ 0.49
LINC00339-213ENST00000642137 ZMYM3Q14202 1370 aa18.12■□□□□ 0.49
LINC00339-213ENST00000642137 DHX57Q6P158 1386 aaKnown RBP18.12■□□□□ 0.49
LINC00339-213ENST00000642137 ARHGAP31Q2M1Z3 1444 aa18.12■□□□□ 0.49
LINC00339-213ENST00000642137 FER1L4A9Z1Z3 1794 aa18.11■□□□□ 0.49
LINC00339-213ENST00000642137 MROH2AA6NES4 1674 aa18.09■□□□□ 0.49
LINC00339-213ENST00000642137 CAMSAP1Q5T5Y3 1602 aa18.09■□□□□ 0.49
LINC00339-213ENST00000642137 MADDQ8WXG6 1647 aa18.09■□□□□ 0.49
LINC00339-213ENST00000642137 EFCAB6Q5THR3 1501 aa18.08■□□□□ 0.49
LINC00339-213ENST00000642137 RPRD2Q5VT52 1461 aaKnown RBP18.08■□□□□ 0.49
LINC00339-213ENST00000642137 E9PCH4 1651 aa18.07■□□□□ 0.48
LINC00339-213ENST00000642137 NPATQ14207 1427 aa18.06■□□□□ 0.48
LINC00339-213ENST00000642137 CFAP65Q6ZU64 1925 aaKnown RBP18.06■□□□□ 0.48
LINC00339-213ENST00000642137 KDM4FA0A1W2PPD8 638 aa18.06■□□□□ 0.48
LINC00339-213ENST00000642137 FOXD1Q16676 465 aa18.06■□□□□ 0.48
LINC00339-213ENST00000642137 RIMS1Q86UR5 1692 aaKnown RBP18.05■□□□□ 0.48
LINC00339-213ENST00000642137 CEBPAP49715 358 aaPredicted RBP18.03■□□□□ 0.48
LINC00339-213ENST00000642137 FBXO31Q5XUX0 539 aaPredicted RBP18.03■□□□□ 0.48
LINC00339-213ENST00000642137 PTPRTO14522 1441 aa18.03■□□□□ 0.48
LINC00339-213ENST00000642137 ANKRD30BQ9BXX2 1392 aa18.03■□□□□ 0.48
LINC00339-213ENST00000642137 CLSPNQ9HAW4 1339 aa18.02■□□□□ 0.48
LINC00339-213ENST00000642137 CCER1Q8TC90 406 aaPredicted RBP18.02■□□□□ 0.48
LINC00339-213ENST00000642137 C3P01024 1663 aa18.02■□□□□ 0.47
LINC00339-213ENST00000642137 NOS1P29475 1434 aa18.01■□□□□ 0.47
LINC00339-213ENST00000642137 PTPRMP28827 1452 aa18■□□□□ 0.47
LINC00339-213ENST00000642137 PREX1Q8TCU6 1659 aa17.99■□□□□ 0.47
LINC00339-213ENST00000642137 ERVK-7P63135 1459 aa17.99■□□□□ 0.47
LINC00339-213ENST00000642137 PLA2R1Q13018 1463 aa17.99■□□□□ 0.47
LINC00339-213ENST00000642137 SPHKAPQ2M3C7 1700 aa17.98■□□□□ 0.47
LINC00339-213ENST00000642137 SLC52A1Q9NWF4 448 aa17.98■□□□□ 0.47
LINC00339-213ENST00000642137 SPATA31D1Q6ZQQ2 1576 aa17.98■□□□□ 0.47
LINC00339-213ENST00000642137 SETD1BQ9UPS6 1966 aaKnown RBP17.97■□□□□ 0.47
LINC00339-213ENST00000642137 PLPPR3Q6T4P5 718 aa17.96■□□□□ 0.47
LINC00339-213ENST00000642137 TRPM2O94759 1503 aa17.95■□□□□ 0.46
LINC00339-213ENST00000642137 TNRQ92752 1358 aa17.94■□□□□ 0.46
LINC00339-213ENST00000642137 IDI1Q13907 227 aa17.94■□□□□ 0.46
LINC00339-213ENST00000642137 CCDC144AA2RUR9 1427 aa17.93■□□□□ 0.46
LINC00339-213ENST00000642137 SIN3AQ96ST3 1273 aa17.93■□□□□ 0.46
LINC00339-213ENST00000642137 SYNMO15061 1565 aa17.92■□□□□ 0.46
LINC00339-213ENST00000642137 PIK3C2BO00750 1634 aa17.9■□□□□ 0.46
LINC00339-213ENST00000642137 NEUROD1Q13562 356 aa17.89■□□□□ 0.45
LINC00339-213ENST00000642137 NLRP1Q9C000 1473 aa17.88■□□□□ 0.45
LINC00339-213ENST00000642137 CLTCL1P53675 1640 aa17.88■□□□□ 0.45
LINC00339-213ENST00000642137 KIF1BO60333 1816 aa17.87■□□□□ 0.45
LINC00339-213ENST00000642137 UGGT1Q9NYU2 1555 aa17.87■□□□□ 0.45
LINC00339-213ENST00000642137 CHGAP10645 457 aaKnown RBP17.85■□□□□ 0.45
LINC00339-213ENST00000642137 STAG3Q9UJ98 1225 aa17.85■□□□□ 0.45
LINC00339-213ENST00000642137 TIMELESSQ9UNS1 1208 aa17.85■□□□□ 0.45
LINC00339-213ENST00000642137 NEURL4Q96JN8 1562 aa17.84■□□□□ 0.45
LINC00339-213ENST00000642137 A2ML1A8K2U0 1454 aa17.83■□□□□ 0.45
LINC00339-213ENST00000642137 SPATA31E1Q6ZUB1 1445 aa17.82■□□□□ 0.44
LINC00339-213ENST00000642137 THEMISQ8N1K5 641 aaPredicted RBP17.82■□□□□ 0.44
LINC00339-213ENST00000642137 KDM5AP29375 1690 aaKnown RBP17.82■□□□□ 0.44
LINC00339-213ENST00000642137 UHRF1BP1Q6BDS2 1440 aa17.81■□□□□ 0.44
LINC00339-213ENST00000642137 RPGRIP1LQ68CZ1 1315 aa17.81■□□□□ 0.44
LINC00339-213ENST00000642137 TMEM131LA2VDJ0 1609 aa17.81■□□□□ 0.44
LINC00339-213ENST00000642137 MYO3AQ8NEV4 1616 aa17.81■□□□□ 0.44
LINC00339-213ENST00000642137 RGL3Q3MIN7 710 aa17.81■□□□□ 0.44
LINC00339-213ENST00000642137 ZNF326Q5BKZ1 582 aaKnown RBP17.79■□□□□ 0.44
LINC00339-213ENST00000642137 STAC3Q96MF2 364 aa17.79■□□□□ 0.44
LINC00339-213ENST00000642137 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
LINC00339-213ENST00000642137 UBR1Q8IWV7 1749 aa17.78■□□□□ 0.44
LINC00339-213ENST00000642137 ADGRB3O60242 1522 aa17.78■□□□□ 0.44
LINC00339-213ENST00000642137 HDGFP51858 240 aaKnown RBP17.78■□□□□ 0.44
LINC00339-213ENST00000642137 L3MBTL2Q969R5 705 aa17.78■□□□□ 0.44
LINC00339-213ENST00000642137 TONSLQ96HA7 1378 aa17.78■□□□□ 0.44
LINC00339-213ENST00000642137 ZNF142P52746 1687 aaPredicted RBP17.77■□□□□ 0.44
LINC00339-213ENST00000642137 MYO5BQ9ULV0 1848 aa17.77■□□□□ 0.44
LINC00339-213ENST00000642137 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.74■□□□□ 0.43
LINC00339-213ENST00000642137 DCAF11Q8TEB1 546 aa17.74■□□□□ 0.43
LINC00339-213ENST00000642137 TMEM2Q9UHN6 1383 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms