RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RTEL1-TNFRSF6BF6WH68 1400 aa24.07■■□□□ 1.44
SYNE2-228ENST00000639659 CCDC141Q6ZP82 1450 aa24.07■■□□□ 1.44
SYNE2-228ENST00000639659 CAMSAP2Q08AD1 1489 aa24.06■■□□□ 1.44
SYNE2-228ENST00000639659 TNRQ92752 1358 aa24.05■■□□□ 1.44
SYNE2-228ENST00000639659 FBXO31Q5XUX0 539 aaPredicted RBP24.05■■□□□ 1.44
SYNE2-228ENST00000639659 POLR1AO95602 1720 aaPredicted RBP24.04■■□□□ 1.44
SYNE2-228ENST00000639659 KDM5DQ9BY66 1539 aa24.04■■□□□ 1.44
SYNE2-228ENST00000639659 NCOA2Q15596 1464 aa24.03■■□□□ 1.44
SYNE2-228ENST00000639659 WASHC2CQ9Y4E1 1318 aa24.01■■□□□ 1.43
SYNE2-228ENST00000639659 PZPP20742 1482 aa24■■□□□ 1.43
SYNE2-228ENST00000639659 PIP4K2BP78356 416 aa23.99■■□□□ 1.43
SYNE2-228ENST00000639659 NEURL4Q96JN8 1562 aa23.98■■□□□ 1.43
SYNE2-228ENST00000639659 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.96■■□□□ 1.43
SYNE2-228ENST00000639659 TSPY4P0CV99 314 aa23.93■■□□□ 1.42
SYNE2-228ENST00000639659 TSPY10P0CW01 314 aa23.93■■□□□ 1.42
SYNE2-228ENST00000639659 FAM135AQ9P2D6 1515 aa23.93■■□□□ 1.42
SYNE2-228ENST00000639659 RSPH4AQ5TD94 716 aa23.92■■□□□ 1.42
SYNE2-228ENST00000639659 ANKLE2Q86XL3 938 aa23.92■■□□□ 1.42
SYNE2-228ENST00000639659 CPS1P31327 1500 aa23.92■■□□□ 1.42
SYNE2-228ENST00000639659 SHANK2Q9UPX8 1470 aa23.92■■□□□ 1.42
SYNE2-228ENST00000639659 UGGT1Q9NYU2 1555 aa23.91■■□□□ 1.42
SYNE2-228ENST00000639659 ARHGEF5Q12774 1597 aa23.91■■□□□ 1.42
SYNE2-228ENST00000639659 HSPA1LP34931 641 aa23.9■■□□□ 1.42
SYNE2-228ENST00000639659 MIA2Q96PC5 1412 aa23.9■■□□□ 1.42
SYNE2-228ENST00000639659 TOM1O60784 492 aa23.89■■□□□ 1.41
SYNE2-228ENST00000639659 THEMISQ8N1K5 641 aaPredicted RBP23.89■■□□□ 1.41
SYNE2-228ENST00000639659 NLRP1Q9C000 1473 aa23.88■■□□□ 1.41
SYNE2-228ENST00000639659 NPHP4O75161 1426 aaPredicted RBP23.87■■□□□ 1.41
SYNE2-228ENST00000639659 SENP3Q9H4L4 574 aaPredicted RBP23.87■■□□□ 1.41
SYNE2-228ENST00000639659 VWDEQ8N2E2 1590 aa23.85■■□□□ 1.41
SYNE2-228ENST00000639659 MED1Q15648 1581 aaPredicted RBP23.84■■□□□ 1.41
SYNE2-228ENST00000639659 IQGAP1P46940 1657 aa23.83■■□□□ 1.41
SYNE2-228ENST00000639659 RNF17Q9BXT8 1623 aaKnown RBP23.83■■□□□ 1.41
SYNE2-228ENST00000639659 ABCC3O15438 1527 aa23.83■■□□□ 1.41
SYNE2-228ENST00000639659 LRRC9Q6ZRR7 1453 aa23.82■■□□□ 1.4
SYNE2-228ENST00000639659 ZC3H13Q5T200 1668 aaKnown RBP23.82■■□□□ 1.4
SYNE2-228ENST00000639659 DEPDC5O75140 1603 aa23.81■■□□□ 1.4
SYNE2-228ENST00000639659 CEP152O94986 1710 aa23.81■■□□□ 1.4
SYNE2-228ENST00000639659 VPS8Q8N3P4 1428 aa23.8■■□□□ 1.4
SYNE2-228ENST00000639659 CFAP65Q6ZU64 1925 aaKnown RBP23.8■■□□□ 1.4
SYNE2-228ENST00000639659 MAST1Q9Y2H9 1570 aa23.79■■□□□ 1.4
SYNE2-228ENST00000639659 MED14O60244 1454 aa23.78■■□□□ 1.4
SYNE2-228ENST00000639659 ERVK-7P63135 1459 aa23.78■■□□□ 1.4
SYNE2-228ENST00000639659 EIF2AK4Q9P2K8 1649 aaKnown RBP23.77■■□□□ 1.4
SYNE2-228ENST00000639659 KANK4Q5T7N3 995 aaPredicted RBP23.75■■□□□ 1.39
SYNE2-228ENST00000639659 PHF23Q9BUL5 403 aaPredicted RBP23.75■■□□□ 1.39
SYNE2-228ENST00000639659 MROH1Q8NDA8 1641 aa23.74■■□□□ 1.39
SYNE2-228ENST00000639659 STRCP1A6NGW2 1772 aa23.74■■□□□ 1.39
SYNE2-228ENST00000639659 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
SYNE2-228ENST00000639659 MYOM3Q5VTT5 1437 aa23.73■■□□□ 1.39
SYNE2-228ENST00000639659 ALKQ9UM73 1620 aa23.71■■□□□ 1.39
SYNE2-228ENST00000639659 UBR1Q8IWV7 1749 aa23.7■■□□□ 1.39
SYNE2-228ENST00000639659 SYNMO15061 1565 aa23.69■■□□□ 1.38
SYNE2-228ENST00000639659 LRRC7Q96NW7 1537 aa23.69■■□□□ 1.38
SYNE2-228ENST00000639659 DUOX2Q9NRD8 1548 aa23.69■■□□□ 1.38
SYNE2-228ENST00000639659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.68■■□□□ 1.38
SYNE2-228ENST00000639659 SCAF11Q99590 1463 aaKnown RBP23.68■■□□□ 1.38
SYNE2-228ENST00000639659 KIF15Q9NS87 1388 aa23.66■■□□□ 1.38
SYNE2-228ENST00000639659 RRP7BPQ9NSQ0 103 aa23.65■■□□□ 1.38
SYNE2-228ENST00000639659 TXNDC2Q86VQ3 553 aa23.64■■□□□ 1.37
SYNE2-228ENST00000639659 CROCC2H7BZ55 1655 aa23.64■■□□□ 1.37
SYNE2-228ENST00000639659 PRDM15P57071 1507 aaPredicted RBP23.62■■□□□ 1.37
SYNE2-228ENST00000639659 MAP3K1Q13233 1512 aa23.62■■□□□ 1.37
SYNE2-228ENST00000639659 LTKP29376 864 aa23.61■■□□□ 1.37
SYNE2-228ENST00000639659 STAG3Q9UJ98 1225 aa23.61■■□□□ 1.37
SYNE2-228ENST00000639659 PTPN23Q9H3S7 1636 aa23.6■■□□□ 1.37
SYNE2-228ENST00000639659 EID1Q9Y6B2 187 aa23.6■■□□□ 1.37
SYNE2-228ENST00000639659 ERBINQ96RT1 1412 aa23.59■■□□□ 1.37
SYNE2-228ENST00000639659 PIK3C2BO00750 1634 aa23.59■■□□□ 1.37
SYNE2-228ENST00000639659 APLP2Q06481 763 aa23.59■■□□□ 1.37
SYNE2-228ENST00000639659 ABCC5O15440 1437 aa23.59■■□□□ 1.37
SYNE2-228ENST00000639659 SLIT1O75093 1534 aa23.58■■□□□ 1.36
SYNE2-228ENST00000639659 KANK1Q14678 1352 aa23.57■■□□□ 1.36
SYNE2-228ENST00000639659 ARHGAP23Q9P227 1491 aa23.56■■□□□ 1.36
SYNE2-228ENST00000639659 CHIC2Q9UKJ5 165 aa23.55■■□□□ 1.36
SYNE2-228ENST00000639659 DAPK1P53355 1430 aa23.55■■□□□ 1.36
SYNE2-228ENST00000639659 ARHGAP31Q2M1Z3 1444 aa23.55■■□□□ 1.36
SYNE2-228ENST00000639659 XIRP1Q702N8 1843 aaKnown RBP23.53■■□□□ 1.36
SYNE2-228ENST00000639659 TMEM2Q9UHN6 1383 aa23.51■■□□□ 1.35
SYNE2-228ENST00000639659 EFCAB6Q5THR3 1501 aa23.5■■□□□ 1.35
SYNE2-228ENST00000639659 FGD6Q6ZV73 1430 aa23.49■■□□□ 1.35
SYNE2-228ENST00000639659 ANKRD30AQ9BXX3 1397 aa23.48■■□□□ 1.35
SYNE2-228ENST00000639659 BCANQ96GW7 911 aa23.47■■□□□ 1.35
SYNE2-228ENST00000639659 RBM33Q96EV2 1170 aaKnown RBP23.46■■□□□ 1.35
SYNE2-228ENST00000639659 SLC26A8Q96RN1 970 aa23.46■■□□□ 1.35
SYNE2-228ENST00000639659 TMEM94Q12767 1356 aa23.45■■□□□ 1.34
SYNE2-228ENST00000639659 IDI1Q13907 227 aa23.45■■□□□ 1.34
SYNE2-228ENST00000639659 PROSER2Q86WR7 435 aaPredicted RBP23.42■■□□□ 1.34
SYNE2-228ENST00000639659 LMTK2Q8IWU2 1503 aa23.42■■□□□ 1.34
SYNE2-228ENST00000639659 ADGRB3O60242 1522 aa23.41■■□□□ 1.34
SYNE2-228ENST00000639659 KDM5AP29375 1690 aaKnown RBP23.41■■□□□ 1.34
SYNE2-228ENST00000639659 ROBO1Q9Y6N7 1651 aa23.39■■□□□ 1.34
SYNE2-228ENST00000639659 KCNA6P17658 529 aa23.39■■□□□ 1.33
SYNE2-228ENST00000639659 FAM50AQ14320 339 aaKnown RBP23.38■■□□□ 1.33
SYNE2-228ENST00000639659 FAM135BQ49AJ0 1406 aa23.37■■□□□ 1.33
SYNE2-228ENST00000639659 RGS17Q9UGC6 210 aaPredicted RBP23.37■■□□□ 1.33
SYNE2-228ENST00000639659 TET3O43151 1660 aa23.35■■□□□ 1.33
SYNE2-228ENST00000639659 NOS1P29475 1434 aa23.35■■□□□ 1.33
SYNE2-228ENST00000639659 PPP1R15AO75807 674 aaPredicted RBP23.34■■□□□ 1.33
SYNE2-228ENST00000639659 MYO5BQ9ULV0 1848 aa23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms