RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 ERBINQ96RT1 1412 aa12.37□□□□□ -0.43
PNKP-226ENST00000636840 RIMS1Q86UR5 1692 aaKnown RBP12.37□□□□□ -0.43
PNKP-226ENST00000636840 SIGLEC1Q9BZZ2 1709 aa12.37□□□□□ -0.43
PNKP-226ENST00000636840 FER1L4A9Z1Z3 1794 aa12.36□□□□□ -0.43
PNKP-226ENST00000636840 ADGRL2O95490 1459 aa12.36□□□□□ -0.43
PNKP-226ENST00000636840 ANKRD50Q9ULJ7 1429 aa12.36□□□□□ -0.43
PNKP-226ENST00000636840 SETD1BQ9UPS6 1966 aaKnown RBP12.36□□□□□ -0.43
PNKP-226ENST00000636840 CROCC2H7BZ55 1655 aa12.35□□□□□ -0.43
PNKP-226ENST00000636840 PTPRKQ15262 1439 aa12.33□□□□□ -0.44
PNKP-226ENST00000636840 FAM135AQ9P2D6 1515 aa12.32□□□□□ -0.44
PNKP-226ENST00000636840 EIF2AK4Q9P2K8 1649 aaKnown RBP12.32□□□□□ -0.44
PNKP-226ENST00000636840 ACIN1Q9UKV3 1341 aaKnown RBP12.32□□□□□ -0.44
PNKP-226ENST00000636840 NPATQ14207 1427 aa12.29□□□□□ -0.44
PNKP-226ENST00000636840 KDM5DQ9BY66 1539 aa12.29□□□□□ -0.44
PNKP-226ENST00000636840 TRIM52Q96A61 297 aa12.29□□□□□ -0.44
PNKP-226ENST00000636840 MROH2AA6NES4 1674 aa12.29□□□□□ -0.44
PNKP-226ENST00000636840 CLTCQ00610 1675 aaKnown RBP12.29□□□□□ -0.44
PNKP-226ENST00000636840 UHRF1BP1Q6BDS2 1440 aa12.28□□□□□ -0.44
PNKP-226ENST00000636840 FBXO31Q5XUX0 539 aaPredicted RBP12.28□□□□□ -0.44
PNKP-226ENST00000636840 RNF17Q9BXT8 1623 aaKnown RBP12.27□□□□□ -0.44
PNKP-226ENST00000636840 NUP155O75694 1391 aa12.27□□□□□ -0.45
PNKP-226ENST00000636840 TNRQ92752 1358 aa12.26□□□□□ -0.45
PNKP-226ENST00000636840 C3P01024 1663 aa12.26□□□□□ -0.45
PNKP-226ENST00000636840 HSPA2P54652 639 aa12.25□□□□□ -0.45
PNKP-226ENST00000636840 THEMISQ8N1K5 641 aaPredicted RBP12.25□□□□□ -0.45
PNKP-226ENST00000636840 DMRT2Q9Y5R5 561 aa12.25□□□□□ -0.45
PNKP-226ENST00000636840 PZPP20742 1482 aa12.25□□□□□ -0.45
PNKP-226ENST00000636840 ABCC3O15438 1527 aa12.24□□□□□ -0.45
PNKP-226ENST00000636840 NAIPQ13075 1403 aa12.24□□□□□ -0.45
PNKP-226ENST00000636840 ARHGAP31Q2M1Z3 1444 aa12.24□□□□□ -0.45
PNKP-226ENST00000636840 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
PNKP-226ENST00000636840 ZC3H13Q5T200 1668 aaKnown RBP12.23□□□□□ -0.45
PNKP-226ENST00000636840 HFM1A2PYH4 1435 aa12.23□□□□□ -0.45
PNKP-226ENST00000636840 PRDM15P57071 1507 aaPredicted RBP12.22□□□□□ -0.45
PNKP-226ENST00000636840 SLC52A1Q9NWF4 448 aa12.22□□□□□ -0.45
PNKP-226ENST00000636840 PREX1Q8TCU6 1659 aa12.21□□□□□ -0.45
PNKP-226ENST00000636840 LMTK2Q8IWU2 1503 aa12.21□□□□□ -0.46
PNKP-226ENST00000636840 LMTK3Q96Q04 1460 aa12.21□□□□□ -0.46
PNKP-226ENST00000636840 DEPDC5O75140 1603 aa12.2□□□□□ -0.46
PNKP-226ENST00000636840 CFAP65Q6ZU64 1925 aaKnown RBP12.2□□□□□ -0.46
PNKP-226ENST00000636840 SLC4A1APQ9BWU0 796 aaKnown RBP12.2□□□□□ -0.46
PNKP-226ENST00000636840 SETD5Q9C0A6 1442 aa12.2□□□□□ -0.46
PNKP-226ENST00000636840 MROH1Q8NDA8 1641 aa12.19□□□□□ -0.46
PNKP-226ENST00000636840 HDGFP51858 240 aaKnown RBP12.19□□□□□ -0.46
PNKP-226ENST00000636840 NLRP1Q9C000 1473 aa12.19□□□□□ -0.46
PNKP-226ENST00000636840 CEP152O94986 1710 aa12.18□□□□□ -0.46
PNKP-226ENST00000636840 HRCP23327 699 aa12.18□□□□□ -0.46
PNKP-226ENST00000636840 PKD2Q13563 968 aa12.18□□□□□ -0.46
PNKP-226ENST00000636840 ANKLE2Q86XL3 938 aa12.18□□□□□ -0.46
PNKP-226ENST00000636840 VWDEQ8N2E2 1590 aa12.18□□□□□ -0.46
PNKP-226ENST00000636840 A2ML1A8K2U0 1454 aa12.17□□□□□ -0.46
PNKP-226ENST00000636840 ERVK-7P63135 1459 aa12.17□□□□□ -0.46
PNKP-226ENST00000636840 RPRD2Q5VT52 1461 aaKnown RBP12.17□□□□□ -0.46
PNKP-226ENST00000636840 IDI1Q13907 227 aa12.17□□□□□ -0.46
PNKP-226ENST00000636840 CAMSAP1Q5T5Y3 1602 aa12.17□□□□□ -0.46
PNKP-226ENST00000636840 CHGAP10645 457 aaKnown RBP12.16□□□□□ -0.46
PNKP-226ENST00000636840 EID1Q9Y6B2 187 aa12.16□□□□□ -0.46
PNKP-226ENST00000636840 UNC13BO14795 1591 aa12.15□□□□□ -0.46
PNKP-226ENST00000636840 TRIM26Q12899 539 aaPredicted RBP12.15□□□□□ -0.46
PNKP-226ENST00000636840 SPATA31D1Q6ZQQ2 1576 aa12.14□□□□□ -0.47
PNKP-226ENST00000636840 GCC2Q8IWJ2 1684 aa12.14□□□□□ -0.47
PNKP-226ENST00000636840 MPHOSPH9Q99550 1183 aa12.14□□□□□ -0.47
PNKP-226ENST00000636840 UGGT1Q9NYU2 1555 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 NCKAP5LQ9HCH0 1330 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 TET3O43151 1660 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 NOS1P29475 1434 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 EFCAB6Q5THR3 1501 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 IQGAP3Q86VI3 1631 aa12.13□□□□□ -0.47
PNKP-226ENST00000636840 CEP170BQ9Y4F5 1589 aaPredicted RBP12.13□□□□□ -0.47
PNKP-226ENST00000636840 TXNDC2Q86VQ3 553 aa12.12□□□□□ -0.47
PNKP-226ENST00000636840 RAB3GAP2Q9H2M9 1393 aa12.12□□□□□ -0.47
PNKP-226ENST00000636840 MYO3AQ8NEV4 1616 aa12.11□□□□□ -0.47
PNKP-226ENST00000636840 PLA2R1Q13018 1463 aa12.11□□□□□ -0.47
PNKP-226ENST00000636840 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.1□□□□□ -0.47
PNKP-226ENST00000636840 BCANQ96GW7 911 aa12.1□□□□□ -0.47
PNKP-226ENST00000636840 ZNF326Q5BKZ1 582 aaKnown RBP12.09□□□□□ -0.47
PNKP-226ENST00000636840 PTPRTO14522 1441 aa12.09□□□□□ -0.47
PNKP-226ENST00000636840 ZNF142P52746 1687 aaPredicted RBP12.08□□□□□ -0.48
PNKP-226ENST00000636840 PPP1R15AO75807 674 aaPredicted RBP12.08□□□□□ -0.48
PNKP-226ENST00000636840 E9PCH4 1651 aa12.06□□□□□ -0.48
PNKP-226ENST00000636840 TMEM2Q9UHN6 1383 aa12.05□□□□□ -0.48
PNKP-226ENST00000636840 FOXD1Q16676 465 aa12.05□□□□□ -0.48
PNKP-226ENST00000636840 LTKP29376 864 aa12.04□□□□□ -0.48
PNKP-226ENST00000636840 SYNMO15061 1565 aa12.04□□□□□ -0.48
PNKP-226ENST00000636840 PIK3C2BO00750 1634 aa12.03□□□□□ -0.48
PNKP-226ENST00000636840 NPHP4O75161 1426 aaPredicted RBP12.03□□□□□ -0.48
PNKP-226ENST00000636840 STRCQ7RTU9 1775 aa12.02□□□□□ -0.48
PNKP-226ENST00000636840 VGFO15240 615 aaPredicted RBP12.02□□□□□ -0.49
PNKP-226ENST00000636840 RPGRIP1LQ68CZ1 1315 aa12.02□□□□□ -0.49
PNKP-226ENST00000636840 UBR1Q8IWV7 1749 aa12.02□□□□□ -0.49
PNKP-226ENST00000636840 CCDC144AA2RUR9 1427 aa12.02□□□□□ -0.49
PNKP-226ENST00000636840 SCAF11Q99590 1463 aaKnown RBP12.02□□□□□ -0.49
PNKP-226ENST00000636840 SLIT1O75093 1534 aa12.01□□□□□ -0.49
PNKP-226ENST00000636840 KDM5AP29375 1690 aaKnown RBP12.01□□□□□ -0.49
PNKP-226ENST00000636840 RIMS2Q9UQ26 1411 aa12.01□□□□□ -0.49
PNKP-226ENST00000636840 MED14O60244 1454 aa12.01□□□□□ -0.49
PNKP-226ENST00000636840 ARHGAP23Q9P227 1491 aa12.01□□□□□ -0.49
PNKP-226ENST00000636840 ADGRB3O60242 1522 aa12.01□□□□□ -0.49
PNKP-226ENST00000636840 RGL3Q3MIN7 710 aa12□□□□□ -0.49
PNKP-226ENST00000636840 CERKQ8TCT0 537 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms