RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 ACIN1Q9UKV3 1341 aaKnown RBP30.53■■■□□ 2.48
CLN3-245ENST00000636172 RNF17Q9BXT8 1623 aaKnown RBP30.53■■■□□ 2.48
CLN3-245ENST00000636172 AGLP35573 1532 aa30.52■■■□□ 2.48
CLN3-245ENST00000636172 MROH1Q8NDA8 1641 aa30.51■■■□□ 2.47
CLN3-245ENST00000636172 TRIM52Q96A61 297 aa30.51■■■□□ 2.47
CLN3-245ENST00000636172 KDM5DQ9BY66 1539 aa30.5■■■□□ 2.47
CLN3-245ENST00000636172 PRDM15P57071 1507 aaPredicted RBP30.48■■■□□ 2.47
CLN3-245ENST00000636172 NUP155O75694 1391 aa30.47■■■□□ 2.47
CLN3-245ENST00000636172 PZPP20742 1482 aa30.46■■■□□ 2.47
CLN3-245ENST00000636172 DHX57Q6P158 1386 aaKnown RBP30.46■■■□□ 2.47
CLN3-245ENST00000636172 IQGAP3Q86VI3 1631 aa30.44■■■□□ 2.46
CLN3-245ENST00000636172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.44■■■□□ 2.46
CLN3-245ENST00000636172 VWDEQ8N2E2 1590 aa30.42■■■□□ 2.46
CLN3-245ENST00000636172 FAM135AQ9P2D6 1515 aa30.42■■■□□ 2.46
CLN3-245ENST00000636172 GGT6Q6P531 493 aa30.38■■■□□ 2.45
CLN3-245ENST00000636172 MPHOSPH9Q99550 1183 aa30.37■■■□□ 2.45
CLN3-245ENST00000636172 KANK1Q14678 1352 aa30.37■■■□□ 2.45
CLN3-245ENST00000636172 KDM4FA0A1W2PPD8 638 aa30.36■■■□□ 2.45
CLN3-245ENST00000636172 SLC4A1APQ9BWU0 796 aaKnown RBP30.36■■■□□ 2.45
CLN3-245ENST00000636172 CEP152O94986 1710 aa30.34■■■□□ 2.45
CLN3-245ENST00000636172 CCER1Q8TC90 406 aaPredicted RBP30.33■■■□□ 2.45
CLN3-245ENST00000636172 ARID4BQ4LE39 1312 aaPredicted RBP30.33■■■□□ 2.45
CLN3-245ENST00000636172 ABCC3O15438 1527 aa30.32■■■□□ 2.44
CLN3-245ENST00000636172 LMTK2Q8IWU2 1503 aa30.31■■■□□ 2.44
CLN3-245ENST00000636172 TET3O43151 1660 aa30.31■■■□□ 2.44
CLN3-245ENST00000636172 ZC3H13Q5T200 1668 aaKnown RBP30.3■■■□□ 2.44
CLN3-245ENST00000636172 MLECQ14165 292 aa30.28■■■□□ 2.44
CLN3-245ENST00000636172 WASHC2CQ9Y4E1 1318 aa30.26■■■□□ 2.43
CLN3-245ENST00000636172 PKD2Q13563 968 aa30.26■■■□□ 2.43
CLN3-245ENST00000636172 PPP6R1Q9UPN7 881 aa30.25■■■□□ 2.43
CLN3-245ENST00000636172 EFCAB6Q5THR3 1501 aa30.25■■■□□ 2.43
CLN3-245ENST00000636172 E9PCH4 1651 aa30.24■■■□□ 2.43
CLN3-245ENST00000636172 CAMSAP1Q5T5Y3 1602 aa30.23■■■□□ 2.43
CLN3-245ENST00000636172 FOXD1Q16676 465 aa30.23■■■□□ 2.43
CLN3-245ENST00000636172 CLTCQ00610 1675 aaKnown RBP30.21■■■□□ 2.43
CLN3-245ENST00000636172 CLSPNQ9HAW4 1339 aa30.18■■■□□ 2.42
CLN3-245ENST00000636172 ANKRD30BQ9BXX2 1392 aa30.14■■■□□ 2.42
CLN3-245ENST00000636172 NPATQ14207 1427 aa30.14■■■□□ 2.42
CLN3-245ENST00000636172 FER1L4A9Z1Z3 1794 aa30.14■■■□□ 2.41
CLN3-245ENST00000636172 ARHGAP31Q2M1Z3 1444 aa30.13■■■□□ 2.41
CLN3-245ENST00000636172 RPRD2Q5VT52 1461 aaKnown RBP30.13■■■□□ 2.41
CLN3-245ENST00000636172 CNTLNQ9NXG0 1405 aa30.1■■■□□ 2.41
CLN3-245ENST00000636172 ESF1Q9H501 851 aaKnown RBP30.1■■■□□ 2.41
CLN3-245ENST00000636172 MROH2AA6NES4 1674 aa30.1■■■□□ 2.41
CLN3-245ENST00000636172 ADAMTSL3P82987 1691 aa30.1■■■□□ 2.41
CLN3-245ENST00000636172 SPHKAPQ2M3C7 1700 aa30.09■■■□□ 2.41
CLN3-245ENST00000636172 PLA2R1Q13018 1463 aa30.09■■■□□ 2.41
CLN3-245ENST00000636172 MADDQ8WXG6 1647 aa30.08■■■□□ 2.41
CLN3-245ENST00000636172 PTPRTO14522 1441 aa30.06■■■□□ 2.4
CLN3-245ENST00000636172 CFAP65Q6ZU64 1925 aaKnown RBP30.06■■■□□ 2.4
CLN3-245ENST00000636172 TRPM2O94759 1503 aa30.04■■■□□ 2.4
CLN3-245ENST00000636172 ZMYM3Q14202 1370 aa30.04■■■□□ 2.4
CLN3-245ENST00000636172 SIN3AQ96ST3 1273 aa30.04■■■□□ 2.4
CLN3-245ENST00000636172 PREX1Q8TCU6 1659 aa30.03■■■□□ 2.4
CLN3-245ENST00000636172 RIMS1Q86UR5 1692 aaKnown RBP30.01■■■□□ 2.39
CLN3-245ENST00000636172 NOS1P29475 1434 aa30■■■□□ 2.39
CLN3-245ENST00000636172 C3P01024 1663 aa29.98■■■□□ 2.39
CLN3-245ENST00000636172 ERVK-7P63135 1459 aa29.98■■■□□ 2.39
CLN3-245ENST00000636172 SYNMO15061 1565 aa29.97■■■□□ 2.39
CLN3-245ENST00000636172 CCDC144AA2RUR9 1427 aa29.96■■■□□ 2.39
CLN3-245ENST00000636172 CLTCL1P53675 1640 aa29.96■■■□□ 2.39
CLN3-245ENST00000636172 NEUROD1Q13562 356 aa29.96■■■□□ 2.39
CLN3-245ENST00000636172 FBXO31Q5XUX0 539 aaPredicted RBP29.96■■■□□ 2.39
CLN3-245ENST00000636172 SPATA31D1Q6ZQQ2 1576 aa29.96■■■□□ 2.39
CLN3-245ENST00000636172 UGGT1Q9NYU2 1555 aa29.94■■■□□ 2.38
CLN3-245ENST00000636172 PIK3C2BO00750 1634 aa29.91■■■□□ 2.38
CLN3-245ENST00000636172 CEBPAP49715 358 aaPredicted RBP29.89■■■□□ 2.38
CLN3-245ENST00000636172 PTPRMP28827 1452 aa29.82■■■□□ 2.36
CLN3-245ENST00000636172 KIF1BO60333 1816 aa29.82■■■□□ 2.36
CLN3-245ENST00000636172 TNRQ92752 1358 aa29.82■■■□□ 2.36
CLN3-245ENST00000636172 ZEB1P37275 1124 aaPredicted RBP29.81■■■□□ 2.36
CLN3-245ENST00000636172 SLC52A1Q9NWF4 448 aa29.81■■■□□ 2.36
CLN3-245ENST00000636172 SPATA31E1Q6ZUB1 1445 aa29.8■■■□□ 2.36
CLN3-245ENST00000636172 TONSLQ96HA7 1378 aa29.8■■■□□ 2.36
CLN3-245ENST00000636172 PLPPR3Q6T4P5 718 aa29.8■■■□□ 2.36
CLN3-245ENST00000636172 IDI1Q13907 227 aa29.78■■■□□ 2.36
CLN3-245ENST00000636172 NEURL4Q96JN8 1562 aa29.77■■■□□ 2.36
CLN3-245ENST00000636172 TIMELESSQ9UNS1 1208 aa29.76■■■□□ 2.36
CLN3-245ENST00000636172 ADGRB3O60242 1522 aa29.76■■■□□ 2.36
CLN3-245ENST00000636172 TMEM131LA2VDJ0 1609 aa29.72■■■□□ 2.35
CLN3-245ENST00000636172 L3MBTL2Q969R5 705 aa29.72■■■□□ 2.35
CLN3-245ENST00000636172 NLRP1Q9C000 1473 aa29.71■■■□□ 2.35
CLN3-245ENST00000636172 RGL3Q3MIN7 710 aa29.71■■■□□ 2.35
CLN3-245ENST00000636172 MYO3AQ8NEV4 1616 aa29.7■■■□□ 2.35
CLN3-245ENST00000636172 MYO5BQ9ULV0 1848 aa29.7■■■□□ 2.35
CLN3-245ENST00000636172 CHGAP10645 457 aaKnown RBP29.69■■■□□ 2.34
CLN3-245ENST00000636172 KDM5AP29375 1690 aaKnown RBP29.66■■■□□ 2.34
CLN3-245ENST00000636172 SETD1BQ9UPS6 1966 aaKnown RBP29.65■■■□□ 2.34
CLN3-245ENST00000636172 UBR1Q8IWV7 1749 aa29.64■■■□□ 2.34
CLN3-245ENST00000636172 A2ML1A8K2U0 1454 aa29.64■■■□□ 2.34
CLN3-245ENST00000636172 IFT172Q9UG01 1749 aa29.63■■■□□ 2.33
CLN3-245ENST00000636172 PPP1R15AO75807 674 aaPredicted RBP29.61■■■□□ 2.33
CLN3-245ENST00000636172 STAG3Q9UJ98 1225 aa29.61■■■□□ 2.33
CLN3-245ENST00000636172 ZNF142P52746 1687 aaPredicted RBP29.6■■■□□ 2.33
CLN3-245ENST00000636172 CEP170BQ9Y4F5 1589 aaPredicted RBP29.6■■■□□ 2.33
CLN3-245ENST00000636172 ZNF326Q5BKZ1 582 aaKnown RBP29.6■■■□□ 2.33
CLN3-245ENST00000636172 DCAF11Q8TEB1 546 aa29.6■■■□□ 2.33
CLN3-245ENST00000636172 PPLO60437 1756 aa29.6■■■□□ 2.33
CLN3-245ENST00000636172 NEXMIFQ5QGS0 1516 aa29.57■■■□□ 2.33
CLN3-245ENST00000636172 RPGRIP1LQ68CZ1 1315 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms