RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 GCC2Q8IWJ2 1684 aa21.52■■□□□ 1.04
LINC00339-208ENST00000634934 ERBINQ96RT1 1412 aa21.51■■□□□ 1.03
LINC00339-208ENST00000634934 RAB3GAP2Q9H2M9 1393 aa21.51■■□□□ 1.03
LINC00339-208ENST00000634934 AEBP2Q6ZN18 517 aaPredicted RBP21.5■■□□□ 1.03
LINC00339-208ENST00000634934 KIF3BO15066 747 aa21.5■■□□□ 1.03
LINC00339-208ENST00000634934 PTPRMP28827 1452 aa21.45■■□□□ 1.02
LINC00339-208ENST00000634934 TRIM52Q96A61 297 aa21.44■■□□□ 1.02
LINC00339-208ENST00000634934 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.44■■□□□ 1.022e-8■■■□□ 14.6
LINC00339-208ENST00000634934 GGT6Q6P531 493 aa21.43■■□□□ 1.02
LINC00339-208ENST00000634934 PLPPR3Q6T4P5 718 aa21.42■■□□□ 1.02
LINC00339-208ENST00000634934 EIF2AK4Q9P2K8 1649 aaKnown RBP21.41■■□□□ 1.02
LINC00339-208ENST00000634934 CLTCQ00610 1675 aaKnown RBP21.39■■□□□ 1.01
LINC00339-208ENST00000634934 NUP155O75694 1391 aa21.37■■□□□ 1.01
LINC00339-208ENST00000634934 ACIN1Q9UKV3 1341 aaKnown RBP21.37■■□□□ 1.01
LINC00339-208ENST00000634934 RNF17Q9BXT8 1623 aaKnown RBP21.36■■□□□ 1.01
LINC00339-208ENST00000634934 C3P01024 1663 aa21.35■■□□□ 1.01
LINC00339-208ENST00000634934 KANK1Q14678 1352 aa21.35■■□□□ 1.01
LINC00339-208ENST00000634934 MROH1Q8NDA8 1641 aa21.35■■□□□ 1.01
LINC00339-208ENST00000634934 CEBPAP49715 358 aaPredicted RBP21.34■■□□□ 1.01
LINC00339-208ENST00000634934 UNC13BO14795 1591 aa21.33■■□□□ 1.01
LINC00339-208ENST00000634934 ZEB1P37275 1124 aaPredicted RBP21.33■■□□□ 1
LINC00339-208ENST00000634934 ESF1Q9H501 851 aaKnown RBP21.33■■□□□ 1
LINC00339-208ENST00000634934 DEPDC5O75140 1603 aa21.32■■□□□ 1
LINC00339-208ENST00000634934 MROH2AA6NES4 1674 aa21.31■■□□□ 1
LINC00339-208ENST00000634934 WASHC2CQ9Y4E1 1318 aa21.31■■□□□ 1
LINC00339-208ENST00000634934 PRDM15P57071 1507 aaPredicted RBP21.31■■□□□ 1
LINC00339-208ENST00000634934 CNTLNQ9NXG0 1405 aa21.3■■□□□ 1
LINC00339-208ENST00000634934 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
LINC00339-208ENST00000634934 KDM5DQ9BY66 1539 aa21.29■■□□□ 1
LINC00339-208ENST00000634934 PPP6R1Q9UPN7 881 aa21.29■■□□□ 1
LINC00339-208ENST00000634934 MPHOSPH9Q99550 1183 aa21.28■■□□□ 1
LINC00339-208ENST00000634934 CEP152O94986 1710 aa21.28■■□□□ 1
LINC00339-208ENST00000634934 FAM135AQ9P2D6 1515 aa21.27■■□□□ 1
LINC00339-208ENST00000634934 PZPP20742 1482 aa21.27■■□□□ 1
LINC00339-208ENST00000634934 ZMYM3Q14202 1370 aa21.27■□□□□ 0.99
LINC00339-208ENST00000634934 ABCC3O15438 1527 aa21.26■□□□□ 0.99
LINC00339-208ENST00000634934 VWDEQ8N2E2 1590 aa21.25■□□□□ 0.99
LINC00339-208ENST00000634934 IQGAP3Q86VI3 1631 aa21.25■□□□□ 0.99
LINC00339-208ENST00000634934 ZC3H13Q5T200 1668 aaKnown RBP21.24■□□□□ 0.99
LINC00339-208ENST00000634934 PKD2Q13563 968 aa21.23■□□□□ 0.99
LINC00339-208ENST00000634934 DHX57Q6P158 1386 aaKnown RBP21.22■□□□□ 0.99
LINC00339-208ENST00000634934 CAMSAP1Q5T5Y3 1602 aa21.21■□□□□ 0.99
LINC00339-208ENST00000634934 FOXD1Q16676 465 aa21.2■□□□□ 0.98
LINC00339-208ENST00000634934 LMTK2Q8IWU2 1503 aa21.2■□□□□ 0.98
LINC00339-208ENST00000634934 PREX1Q8TCU6 1659 aa21.19■□□□□ 0.98
LINC00339-208ENST00000634934 CCER1Q8TC90 406 aaPredicted RBP21.18■□□□□ 0.98
LINC00339-208ENST00000634934 LMTK3Q96Q04 1460 aa21.18■□□□□ 0.98
LINC00339-208ENST00000634934 TET3O43151 1660 aa21.17■□□□□ 0.98
LINC00339-208ENST00000634934 FBXO31Q5XUX0 539 aaPredicted RBP21.16■□□□□ 0.98
LINC00339-208ENST00000634934 EFCAB6Q5THR3 1501 aa21.15■□□□□ 0.98
LINC00339-208ENST00000634934 CFAP65Q6ZU64 1925 aaKnown RBP21.15■□□□□ 0.98
LINC00339-208ENST00000634934 NPATQ14207 1427 aa21.13■□□□□ 0.97
LINC00339-208ENST00000634934 MYO3AQ8NEV4 1616 aa21.12■□□□□ 0.97
LINC00339-208ENST00000634934 ARHGAP31Q2M1Z3 1444 aa21.12■□□□□ 0.97
LINC00339-208ENST00000634934 E9PCH4 1651 aa21.12■□□□□ 0.97
LINC00339-208ENST00000634934 SETD1BQ9UPS6 1966 aaKnown RBP21.11■□□□□ 0.97
LINC00339-208ENST00000634934 RPRD2Q5VT52 1461 aaKnown RBP21.1■□□□□ 0.97
LINC00339-208ENST00000634934 UHRF1BP1Q6BDS2 1440 aa21.1■□□□□ 0.97
LINC00339-208ENST00000634934 HSPA2P54652 639 aa21.09■□□□□ 0.97
LINC00339-208ENST00000634934 ERVK-7P63135 1459 aa21.07■□□□□ 0.96
LINC00339-208ENST00000634934 SPATA31D1Q6ZQQ2 1576 aa21.07■□□□□ 0.96
LINC00339-208ENST00000634934 TNRQ92752 1358 aa21.06■□□□□ 0.96
LINC00339-208ENST00000634934 ANKRD30BQ9BXX2 1392 aa21.06■□□□□ 0.96
LINC00339-208ENST00000634934 ZNF142P52746 1687 aaPredicted RBP21.05■□□□□ 0.96
LINC00339-208ENST00000634934 CEP170BQ9Y4F5 1589 aaPredicted RBP21.04■□□□□ 0.96
LINC00339-208ENST00000634934 PTPRTO14522 1441 aa21.04■□□□□ 0.96
LINC00339-208ENST00000634934 PLA2R1Q13018 1463 aa21.03■□□□□ 0.96
LINC00339-208ENST00000634934 NOS1P29475 1434 aa21.02■□□□□ 0.96
LINC00339-208ENST00000634934 SIN3AQ96ST3 1273 aa21■□□□□ 0.95
LINC00339-208ENST00000634934 SPHKAPQ2M3C7 1700 aa21■□□□□ 0.95
LINC00339-208ENST00000634934 CCDC144AA2RUR9 1427 aa21■□□□□ 0.95
LINC00339-208ENST00000634934 CLSPNQ9HAW4 1339 aa21■□□□□ 0.95
LINC00339-208ENST00000634934 SYNMO15061 1565 aa20.99■□□□□ 0.95
LINC00339-208ENST00000634934 NEUROD1Q13562 356 aa20.99■□□□□ 0.95
LINC00339-208ENST00000634934 TRPM2O94759 1503 aa20.99■□□□□ 0.95
LINC00339-208ENST00000634934 A2ML1A8K2U0 1454 aa20.98■□□□□ 0.95
LINC00339-208ENST00000634934 UGGT1Q9NYU2 1555 aa20.96■□□□□ 0.95
LINC00339-208ENST00000634934 SLC52A1Q9NWF4 448 aa20.96■□□□□ 0.95
LINC00339-208ENST00000634934 NLRP1Q9C000 1473 aa20.96■□□□□ 0.95
LINC00339-208ENST00000634934 STRCQ7RTU9 1775 aa20.95■□□□□ 0.94
LINC00339-208ENST00000634934 CHGAP10645 457 aaKnown RBP20.94■□□□□ 0.94
LINC00339-208ENST00000634934 IDI1Q13907 227 aa20.94■□□□□ 0.94
LINC00339-208ENST00000634934 PIK3C2BO00750 1634 aa20.94■□□□□ 0.94
LINC00339-208ENST00000634934 UBR1Q8IWV7 1749 aa20.93■□□□□ 0.94
LINC00339-208ENST00000634934 CLTCL1P53675 1640 aa20.93■□□□□ 0.94
LINC00339-208ENST00000634934 STAG3Q9UJ98 1225 aa20.91■□□□□ 0.94
LINC00339-208ENST00000634934 RGL3Q3MIN7 710 aa20.88■□□□□ 0.93
LINC00339-208ENST00000634934 MYO5BQ9ULV0 1848 aa20.86■□□□□ 0.93
LINC00339-208ENST00000634934 NCKAP5LQ9HCH0 1330 aa20.85■□□□□ 0.93
LINC00339-208ENST00000634934 ZNF326Q5BKZ1 582 aaKnown RBP20.85■□□□□ 0.93
LINC00339-208ENST00000634934 POLR1AO95602 1720 aaPredicted RBP20.84■□□□□ 0.93
LINC00339-208ENST00000634934 TONSLQ96HA7 1378 aa20.84■□□□□ 0.93
LINC00339-208ENST00000634934 ADGRB3O60242 1522 aa20.84■□□□□ 0.93
LINC00339-208ENST00000634934 THEMISQ8N1K5 641 aaPredicted RBP20.83■□□□□ 0.93
LINC00339-208ENST00000634934 SPATA31E1Q6ZUB1 1445 aa20.83■□□□□ 0.92
LINC00339-208ENST00000634934 KDM5AP29375 1690 aaKnown RBP20.82■□□□□ 0.92
LINC00339-208ENST00000634934 KIF1BO60333 1816 aa20.82■□□□□ 0.92
LINC00339-208ENST00000634934 TMEM131LA2VDJ0 1609 aa20.81■□□□□ 0.92
LINC00339-208ENST00000634934 NEURL4Q96JN8 1562 aa20.81■□□□□ 0.92
LINC00339-208ENST00000634934 L3MBTL2Q969R5 705 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms