RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 DUOX2Q9NRD8 1548 aa21.92■■□□□ 1.1
PNKP-223ENST00000629179 UHRF1BP1Q6BDS2 1440 aa21.92■■□□□ 1.1
PNKP-223ENST00000629179 KIF15Q9NS87 1388 aa21.91■■□□□ 1.1
PNKP-223ENST00000629179 EIF2AK4Q9P2K8 1649 aaKnown RBP21.9■■□□□ 1.1
PNKP-223ENST00000629179 NPATQ14207 1427 aa21.89■■□□□ 1.1
PNKP-223ENST00000629179 WASHC2CQ9Y4E1 1318 aa21.89■■□□□ 1.1
PNKP-223ENST00000629179 RNF17Q9BXT8 1623 aaKnown RBP21.89■■□□□ 1.09
PNKP-223ENST00000629179 KDM5DQ9BY66 1539 aa21.88■■□□□ 1.09
PNKP-223ENST00000629179 PTPRKQ15262 1439 aa21.88■■□□□ 1.09
PNKP-223ENST00000629179 ANKRD30AQ9BXX3 1397 aa21.87■■□□□ 1.09
PNKP-223ENST00000629179 FAM135AQ9P2D6 1515 aa21.85■■□□□ 1.09
PNKP-223ENST00000629179 CFAP65Q6ZU64 1925 aaKnown RBP21.85■■□□□ 1.09
PNKP-223ENST00000629179 NCOA1Q15788 1441 aa21.85■■□□□ 1.09
PNKP-223ENST00000629179 MROH1Q8NDA8 1641 aa21.84■■□□□ 1.09
PNKP-223ENST00000629179 ERBINQ96RT1 1412 aa21.83■■□□□ 1.09
PNKP-223ENST00000629179 FBXO31Q5XUX0 539 aaPredicted RBP21.83■■□□□ 1.09
PNKP-223ENST00000629179 CEP152O94986 1710 aa21.82■■□□□ 1.08
PNKP-223ENST00000629179 ADGRL2O95490 1459 aa21.82■■□□□ 1.08
PNKP-223ENST00000629179 STRCQ7RTU9 1775 aa21.81■■□□□ 1.08
PNKP-223ENST00000629179 ABCC3O15438 1527 aa21.8■■□□□ 1.08
PNKP-223ENST00000629179 PZPP20742 1482 aa21.8■■□□□ 1.08
PNKP-223ENST00000629179 MYO3AQ8NEV4 1616 aa21.8■■□□□ 1.08
PNKP-223ENST00000629179 ZC3H13Q5T200 1668 aaKnown RBP21.79■■□□□ 1.08
PNKP-223ENST00000629179 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.79■■□□□ 1.085e-6■■■■□ 19.5
PNKP-223ENST00000629179 ITGAEP38570 1179 aa21.77■■□□□ 1.08
PNKP-223ENST00000629179 ZNF142P52746 1687 aaPredicted RBP21.76■■□□□ 1.07
PNKP-223ENST00000629179 DEPDC5O75140 1603 aa21.76■■□□□ 1.07
PNKP-223ENST00000629179 PRDM15P57071 1507 aaPredicted RBP21.75■■□□□ 1.07
PNKP-223ENST00000629179 TNRQ92752 1358 aa21.75■■□□□ 1.07
PNKP-223ENST00000629179 CEP170BQ9Y4F5 1589 aaPredicted RBP21.74■■□□□ 1.07
PNKP-223ENST00000629179 CAMSAP1Q5T5Y3 1602 aa21.74■■□□□ 1.07
PNKP-223ENST00000629179 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.74■■□□□ 1.07
PNKP-223ENST00000629179 ANKRD50Q9ULJ7 1429 aa21.72■■□□□ 1.07
PNKP-223ENST00000629179 KANK1Q14678 1352 aa21.71■■□□□ 1.07
PNKP-223ENST00000629179 A2ML1A8K2U0 1454 aa21.71■■□□□ 1.07
PNKP-223ENST00000629179 RRBP1Q9P2E9 1410 aaKnown RBP21.7■■□□□ 1.06
PNKP-223ENST00000629179 DMRT2Q9Y5R5 561 aa21.69■■□□□ 1.06
PNKP-223ENST00000629179 ROCK1Q13464 1354 aa21.69■■□□□ 1.06
PNKP-223ENST00000629179 SPATA31D1Q6ZQQ2 1576 aa21.67■■□□□ 1.06
PNKP-223ENST00000629179 VWDEQ8N2E2 1590 aa21.67■■□□□ 1.06
PNKP-223ENST00000629179 ERVK-7P63135 1459 aa21.67■■□□□ 1.06
PNKP-223ENST00000629179 NCKAP5LQ9HCH0 1330 aa21.67■■□□□ 1.06
PNKP-223ENST00000629179 ARHGAP31Q2M1Z3 1444 aa21.65■■□□□ 1.06
PNKP-223ENST00000629179 NLRP1Q9C000 1473 aa21.64■■□□□ 1.05
PNKP-223ENST00000629179 PTPRTO14522 1441 aa21.63■■□□□ 1.05
PNKP-223ENST00000629179 LMTK2Q8IWU2 1503 aa21.63■■□□□ 1.05
PNKP-223ENST00000629179 PLA2R1Q13018 1463 aa21.63■■□□□ 1.05
PNKP-223ENST00000629179 UGGT1Q9NYU2 1555 aa21.61■■□□□ 1.05
PNKP-223ENST00000629179 PKD2Q13563 968 aa21.6■■□□□ 1.05
PNKP-223ENST00000629179 THEMISQ8N1K5 641 aaPredicted RBP21.59■■□□□ 1.05
PNKP-223ENST00000629179 UNC13BO14795 1591 aa21.58■■□□□ 1.05
PNKP-223ENST00000629179 ILDR1Q86SU0 546 aaPredicted RBP21.58■■□□□ 1.05
PNKP-223ENST00000629179 EFCAB6Q5THR3 1501 aa21.57■■□□□ 1.04
PNKP-223ENST00000629179 POLR1AO95602 1720 aaPredicted RBP21.56■■□□□ 1.04
PNKP-223ENST00000629179 TET3O43151 1660 aa21.55■■□□□ 1.04
PNKP-223ENST00000629179 UBR1Q8IWV7 1749 aa21.55■■□□□ 1.04
PNKP-223ENST00000629179 GCC2Q8IWJ2 1684 aa21.53■■□□□ 1.04
PNKP-223ENST00000629179 ANKLE2Q86XL3 938 aa21.53■■□□□ 1.04
PNKP-223ENST00000629179 CERKQ8TCT0 537 aa21.53■■□□□ 1.04
PNKP-223ENST00000629179 SYNMO15061 1565 aa21.52■■□□□ 1.04
PNKP-223ENST00000629179 PIK3C2BO00750 1634 aa21.51■■□□□ 1.03
PNKP-223ENST00000629179 NUP155O75694 1391 aa21.51■■□□□ 1.03
PNKP-223ENST00000629179 NOS1P29475 1434 aa21.51■■□□□ 1.03
PNKP-223ENST00000629179 NEURL4Q96JN8 1562 aa21.51■■□□□ 1.03
PNKP-223ENST00000629179 IQGAP3Q86VI3 1631 aa21.51■■□□□ 1.03
PNKP-223ENST00000629179 IDI1Q13907 227 aa21.5■■□□□ 1.03
PNKP-223ENST00000629179 NAIPQ13075 1403 aa21.49■■□□□ 1.03
PNKP-223ENST00000629179 E9PCH4 1651 aa21.49■■□□□ 1.03
PNKP-223ENST00000629179 RPRD2Q5VT52 1461 aaKnown RBP21.48■■□□□ 1.03
PNKP-223ENST00000629179 FBXO41Q8TF61 875 aa21.47■■□□□ 1.03
PNKP-223ENST00000629179 STAG3Q9UJ98 1225 aa21.47■■□□□ 1.03
PNKP-223ENST00000629179 LTBP4Q8N2S1 1624 aa21.47■■□□□ 1.03
PNKP-223ENST00000629179 ZNF335Q9H4Z2 1342 aaPredicted RBP21.46■■□□□ 1.03
PNKP-223ENST00000629179 SLC52A1Q9NWF4 448 aa21.43■■□□□ 1.02
PNKP-223ENST00000629179 HFM1A2PYH4 1435 aa21.43■■□□□ 1.02
PNKP-223ENST00000629179 NPHP4O75161 1426 aaPredicted RBP21.43■■□□□ 1.02
PNKP-223ENST00000629179 MED14O60244 1454 aa21.43■■□□□ 1.02
PNKP-223ENST00000629179 MYO5BQ9ULV0 1848 aa21.43■■□□□ 1.02
PNKP-223ENST00000629179 KDM5AP29375 1690 aaKnown RBP21.42■■□□□ 1.02
PNKP-223ENST00000629179 LTKP29376 864 aa21.42■■□□□ 1.02
PNKP-223ENST00000629179 ARHGAP23Q9P227 1491 aa21.42■■□□□ 1.02
PNKP-223ENST00000629179 IQGAP1P46940 1657 aa21.41■■□□□ 1.02
PNKP-223ENST00000629179 SLIT1O75093 1534 aa21.41■■□□□ 1.02
PNKP-223ENST00000629179 TXNDC2Q86VQ3 553 aa21.41■■□□□ 1.02
PNKP-223ENST00000629179 SCAF11Q99590 1463 aaKnown RBP21.39■■□□□ 1.02
PNKP-223ENST00000629179 TMEM2Q9UHN6 1383 aa21.39■■□□□ 1.02
PNKP-223ENST00000629179 TRIM52Q96A61 297 aa21.38■■□□□ 1.01
PNKP-223ENST00000629179 EID1Q9Y6B2 187 aa21.38■■□□□ 1.01
PNKP-223ENST00000629179 ADGRB3O60242 1522 aa21.38■■□□□ 1.01
PNKP-223ENST00000629179 TMEM131LA2VDJ0 1609 aa21.34■■□□□ 1.01
PNKP-223ENST00000629179 CHGAP10645 457 aaKnown RBP21.34■■□□□ 1.01
PNKP-223ENST00000629179 SPHKAPQ2M3C7 1700 aa21.34■■□□□ 1.01
PNKP-223ENST00000629179 STRCP1A6NGW2 1772 aa21.3■■□□□ 1
PNKP-223ENST00000629179 IQSEC2Q5JU85 1478 aa21.29■■□□□ 1
PNKP-223ENST00000629179 SLC4A1APQ9BWU0 796 aaKnown RBP21.27■■□□□ 1
PNKP-223ENST00000629179 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
PNKP-223ENST00000629179 ZFYVE9O95405 1425 aa21.27■■□□□ 1
PNKP-223ENST00000629179 RIMS2Q9UQ26 1411 aa21.27■■□□□ 1
PNKP-223ENST00000629179 CPS1P31327 1500 aa21.26■□□□□ 0.99
PNKP-223ENST00000629179 NUTM2DQ5VT03 806 aaPredicted RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms