RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 CCDC18Q5T9S5 1454 aa23.07■■□□□ 1.28
SNX1-214ENST00000625244 KIAA1107Q9UPP5 1409 aa23.07■■□□□ 1.28
SNX1-214ENST00000625244 NPHP4O75161 1426 aaPredicted RBP23.06■■□□□ 1.28
SNX1-214ENST00000625244 CASKIN1Q8WXD9 1431 aa23.04■■□□□ 1.28
SNX1-214ENST00000625244 LRRC7Q96NW7 1537 aa23.03■■□□□ 1.28
SNX1-214ENST00000625244 THEMISQ8N1K5 641 aaPredicted RBP23.03■■□□□ 1.28
SNX1-214ENST00000625244 MED14O60244 1454 aa23.03■■□□□ 1.28
SNX1-214ENST00000625244 POTEAQ6S8J7 498 aa23.02■■□□□ 1.28
SNX1-214ENST00000625244 CFDP1Q9UEE9 299 aaPredicted RBP23.01■■□□□ 1.27
SNX1-214ENST00000625244 PLEKHH2Q8IVE3 1493 aa23■■□□□ 1.27
SNX1-214ENST00000625244 PZPP20742 1482 aa22.99■■□□□ 1.27
SNX1-214ENST00000625244 STRCP1A6NGW2 1772 aa22.99■■□□□ 1.27
SNX1-214ENST00000625244 DEPDC5O75140 1603 aa22.98■■□□□ 1.27
SNX1-214ENST00000625244 RNF17Q9BXT8 1623 aaKnown RBP22.97■■□□□ 1.27
SNX1-214ENST00000625244 ADGBQ8N7X0 1667 aa22.97■■□□□ 1.27
SNX1-214ENST00000625244 MIA2Q96PC5 1412 aa22.96■■□□□ 1.27
SNX1-214ENST00000625244 UGGT1Q9NYU2 1555 aa22.95■■□□□ 1.26
SNX1-214ENST00000625244 IQGAP1P46940 1657 aa22.94■■□□□ 1.26
SNX1-214ENST00000625244 FAM135AQ9P2D6 1515 aa22.94■■□□□ 1.26
SNX1-214ENST00000625244 DHX29Q7Z478 1369 aaKnown RBP22.94■■□□□ 1.26
SNX1-214ENST00000625244 NLRP1Q9C000 1473 aa22.93■■□□□ 1.26
SNX1-214ENST00000625244 KIF3BO15066 747 aa22.93■■□□□ 1.26
SNX1-214ENST00000625244 ZNF644Q9H582 1327 aaPredicted RBP22.92■■□□□ 1.26
SNX1-214ENST00000625244 SRCAPQ6ZRS2 3230 aa22.92■■□□□ 1.26
SNX1-214ENST00000625244 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
SNX1-214ENST00000625244 WASHC2CQ9Y4E1 1318 aa22.91■■□□□ 1.26
SNX1-214ENST00000625244 KDM5DQ9BY66 1539 aa22.91■■□□□ 1.26
SNX1-214ENST00000625244 SYNMO15061 1565 aa22.9■■□□□ 1.26
SNX1-214ENST00000625244 MBD5Q9P267 1494 aa22.88■■□□□ 1.25
SNX1-214ENST00000625244 RTEL1-TNFRSF6BF6WH68 1400 aa22.87■■□□□ 1.25
SNX1-214ENST00000625244 FYCO1Q9BQS8 1478 aa22.86■■□□□ 1.25
SNX1-214ENST00000625244 SETD1AO15047 1707 aaKnown RBP22.82■■□□□ 1.24
SNX1-214ENST00000625244 FAM135BQ49AJ0 1406 aa22.82■■□□□ 1.24
SNX1-214ENST00000625244 ZC3H13Q5T200 1668 aaKnown RBP22.8■■□□□ 1.24
SNX1-214ENST00000625244 XIRP1Q702N8 1843 aaKnown RBP22.76■■□□□ 1.23
SNX1-214ENST00000625244 LTKP29376 864 aa22.75■■□□□ 1.23
SNX1-214ENST00000625244 SCAF11Q99590 1463 aaKnown RBP22.74■■□□□ 1.23
SNX1-214ENST00000625244 TIAM1Q13009 1591 aa22.74■■□□□ 1.23
SNX1-214ENST00000625244 MTUS2Q5JR59 1369 aa22.74■■□□□ 1.23
SNX1-214ENST00000625244 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
SNX1-214ENST00000625244 UPF1Q92900 1129 aaKnown RBP eCLIP22.72■■□□□ 1.23
SNX1-214ENST00000625244 TXNDC2Q86VQ3 553 aa22.7■■□□□ 1.22
SNX1-214ENST00000625244 ERVK-7P63135 1459 aa22.7■■□□□ 1.22
SNX1-214ENST00000625244 NCOA2Q15596 1464 aa22.69■■□□□ 1.22
SNX1-214ENST00000625244 CCDC141Q6ZP82 1450 aa22.69■■□□□ 1.22
SNX1-214ENST00000625244 TMEM94Q12767 1356 aa22.68■■□□□ 1.22
SNX1-214ENST00000625244 ROBO1Q9Y6N7 1651 aa22.68■■□□□ 1.22
SNX1-214ENST00000625244 ABCC3O15438 1527 aa22.67■■□□□ 1.22
SNX1-214ENST00000625244 UBR1Q8IWV7 1749 aa22.66■■□□□ 1.22
SNX1-214ENST00000625244 ARHGAP23Q9P227 1491 aa22.66■■□□□ 1.22
SNX1-214ENST00000625244 RBM33Q96EV2 1170 aaKnown RBP22.64■■□□□ 1.21
SNX1-214ENST00000625244 SLIT1O75093 1534 aa22.63■■□□□ 1.21
SNX1-214ENST00000625244 RSPH4AQ5TD94 716 aa22.62■■□□□ 1.21
SNX1-214ENST00000625244 CAMSAP2Q08AD1 1489 aa22.6■■□□□ 1.21
SNX1-214ENST00000625244 TRIM52Q96A61 297 aa22.6■■□□□ 1.21
SNX1-214ENST00000625244 EID1Q9Y6B2 187 aa22.6■■□□□ 1.21
SNX1-214ENST00000625244 MAP3K1Q13233 1512 aa22.6■■□□□ 1.21
SNX1-214ENST00000625244 JCADQ9P266 1359 aa22.6■■□□□ 1.21
SNX1-214ENST00000625244 CEP162Q5TB80 1403 aa22.59■■□□□ 1.21
SNX1-214ENST00000625244 KCNA6P17658 529 aa22.58■■□□□ 1.21
SNX1-214ENST00000625244 PROSER2Q86WR7 435 aaPredicted RBP22.58■■□□□ 1.21
SNX1-214ENST00000625244 EHBP1L1Q8N3D4 1523 aa22.57■■□□□ 1.2
SNX1-214ENST00000625244 TSPY4P0CV99 314 aa22.57■■□□□ 1.2
SNX1-214ENST00000625244 TSPY10P0CW01 314 aa22.57■■□□□ 1.2
SNX1-214ENST00000625244 LRRC9Q6ZRR7 1453 aa22.56■■□□□ 1.2
SNX1-214ENST00000625244 CFAP65Q6ZU64 1925 aaKnown RBP22.56■■□□□ 1.2
SNX1-214ENST00000625244 LRP6O75581 1613 aa22.53■■□□□ 1.2
SNX1-214ENST00000625244 MROH1Q8NDA8 1641 aa22.53■■□□□ 1.2
SNX1-214ENST00000625244 TMEM2Q9UHN6 1383 aa22.53■■□□□ 1.2
SNX1-214ENST00000625244 SLAIN2Q9P270 581 aa22.53■■□□□ 1.2
SNX1-214ENST00000625244 PHLPP1O60346 1717 aa22.53■■□□□ 1.2
SNX1-214ENST00000625244 ZNF772Q68DY9 489 aaPredicted RBP22.52■■□□□ 1.2
SNX1-214ENST00000625244 SLC26A8Q96RN1 970 aa22.52■■□□□ 1.2
SNX1-214ENST00000625244 ARHGEF5Q12774 1597 aa22.5■■□□□ 1.19
SNX1-214ENST00000625244 PRDM15P57071 1507 aaPredicted RBP22.5■■□□□ 1.19
SNX1-214ENST00000625244 CEP152O94986 1710 aa22.49■■□□□ 1.19
SNX1-214ENST00000625244 MEX3CQ5U5Q3 659 aaKnown RBP22.49■■□□□ 1.19
SNX1-214ENST00000625244 MSH6P52701 1360 aa22.48■■□□□ 1.19
SNX1-214ENST00000625244 TET3O43151 1660 aa22.46■■□□□ 1.19
SNX1-214ENST00000625244 RXRBP28702 533 aa22.46■■□□□ 1.19
SNX1-214ENST00000625244 SPATA31A6Q5VVP1 1343 aa22.46■■□□□ 1.19
SNX1-214ENST00000625244 PIK3C2BO00750 1634 aa22.46■■□□□ 1.19
SNX1-214ENST00000625244 COL16A1Q07092 1604 aaPredicted RBP22.46■■□□□ 1.19
SNX1-214ENST00000625244 EIF2AK4Q9P2K8 1649 aaKnown RBP22.46■■□□□ 1.19
SNX1-214ENST00000625244 STAG3Q9UJ98 1225 aa22.45■■□□□ 1.18
SNX1-214ENST00000625244 ARHGAP31Q2M1Z3 1444 aa22.45■■□□□ 1.18
SNX1-214ENST00000625244 NKTRP30414 1462 aaKnown RBP22.44■■□□□ 1.18
SNX1-214ENST00000625244 NWD1Q149M9 1564 aa22.42■■□□□ 1.18
SNX1-214ENST00000625244 FGD6Q6ZV73 1430 aa22.41■■□□□ 1.18
SNX1-214ENST00000625244 MAST1Q9Y2H9 1570 aa22.41■■□□□ 1.18
SNX1-214ENST00000625244 IDI1Q13907 227 aa22.39■■□□□ 1.17
SNX1-214ENST00000625244 EFCAB6Q5THR3 1501 aa22.39■■□□□ 1.17
SNX1-214ENST00000625244 CDK12Q9NYV4 1490 aaPredicted RBP22.38■■□□□ 1.17
SNX1-214ENST00000625244 BCANQ96GW7 911 aa22.34■■□□□ 1.17
SNX1-214ENST00000625244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.33■■□□□ 1.179e-7■□□□□ 9.9
SNX1-214ENST00000625244 DUOX2Q9NRD8 1548 aa22.32■■□□□ 1.16
SNX1-214ENST00000625244 NUTM2BA6NNL0 878 aaPredicted RBP22.32■■□□□ 1.16
SNX1-214ENST00000625244 NUTM2EB1AL46 878 aaPredicted RBP22.32■■□□□ 1.16
SNX1-214ENST00000625244 NUTM2AQ8IVF1 878 aaPredicted RBP22.32■■□□□ 1.16
SNX1-214ENST00000625244 KDM5AP29375 1690 aaKnown RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms