RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 DUOX2Q9NRD8 1548 aa23.15■■□□□ 1.3
LINC00643-205ENST00000623219 ZMYM3Q14202 1370 aa23.14■■□□□ 1.3
LINC00643-205ENST00000623219 PPP6R1Q9UPN7 881 aa23.14■■□□□ 1.29
LINC00643-205ENST00000623219 MROH1Q8NDA8 1641 aa23.14■■□□□ 1.29
LINC00643-205ENST00000623219 HSPA2P54652 639 aa23.13■■□□□ 1.29
LINC00643-205ENST00000623219 GGT6Q6P531 493 aa23.13■■□□□ 1.29
LINC00643-205ENST00000623219 DAPK1P53355 1430 aa23.12■■□□□ 1.29
LINC00643-205ENST00000623219 ABCC5O15440 1437 aa23.11■■□□□ 1.29
LINC00643-205ENST00000623219 DEPDC5O75140 1603 aa23.11■■□□□ 1.29
LINC00643-205ENST00000623219 CEP170BQ9Y4F5 1589 aaPredicted RBP23.1■■□□□ 1.29
LINC00643-205ENST00000623219 PTPRKQ15262 1439 aa23.1■■□□□ 1.29
LINC00643-205ENST00000623219 ILDR1Q86SU0 546 aaPredicted RBP23.1■■□□□ 1.29
LINC00643-205ENST00000623219 CAMSAP1Q5T5Y3 1602 aa23.09■■□□□ 1.29
LINC00643-205ENST00000623219 KIF3BO15066 747 aa23.08■■□□□ 1.29
LINC00643-205ENST00000623219 PRDM15P57071 1507 aaPredicted RBP23.08■■□□□ 1.28
LINC00643-205ENST00000623219 PZPP20742 1482 aa23.06■■□□□ 1.28
LINC00643-205ENST00000623219 ERBINQ96RT1 1412 aa23.06■■□□□ 1.28
LINC00643-205ENST00000623219 ABCC3O15438 1527 aa23.05■■□□□ 1.28
LINC00643-205ENST00000623219 POLR1AO95602 1720 aaPredicted RBP23.05■■□□□ 1.28
LINC00643-205ENST00000623219 CFAP65Q6ZU64 1925 aaKnown RBP23.04■■□□□ 1.28
LINC00643-205ENST00000623219 KIF15Q9NS87 1388 aa23.03■■□□□ 1.28
LINC00643-205ENST00000623219 ADGRL2O95490 1459 aa23.01■■□□□ 1.27
LINC00643-205ENST00000623219 NCOA1Q15788 1441 aa22.99■■□□□ 1.27
LINC00643-205ENST00000623219 WASHC2CQ9Y4E1 1318 aa22.98■■□□□ 1.27
LINC00643-205ENST00000623219 A2ML1A8K2U0 1454 aa22.98■■□□□ 1.27
LINC00643-205ENST00000623219 SPATA31D1Q6ZQQ2 1576 aa22.97■■□□□ 1.27
LINC00643-205ENST00000623219 ANKRD30AQ9BXX3 1397 aa22.97■■□□□ 1.27
LINC00643-205ENST00000623219 PLA2R1Q13018 1463 aa22.97■■□□□ 1.27
LINC00643-205ENST00000623219 PTPRTO14522 1441 aa22.93■■□□□ 1.26
LINC00643-205ENST00000623219 VWDEQ8N2E2 1590 aa22.93■■□□□ 1.26
LINC00643-205ENST00000623219 TNRQ92752 1358 aa22.92■■□□□ 1.26
LINC00643-205ENST00000623219 NLRP1Q9C000 1473 aa22.92■■□□□ 1.26
LINC00643-205ENST00000623219 RRP7BPQ9NSQ0 103 aa22.91■■□□□ 1.26
LINC00643-205ENST00000623219 DMRT2Q9Y5R5 561 aa22.91■■□□□ 1.26
LINC00643-205ENST00000623219 ERVK-7P63135 1459 aa22.9■■□□□ 1.26
LINC00643-205ENST00000623219 UBR1Q8IWV7 1749 aa22.89■■□□□ 1.26
LINC00643-205ENST00000623219 FAM50AQ14320 339 aaKnown RBP22.89■■□□□ 1.25
LINC00643-205ENST00000623219 LMTK2Q8IWU2 1503 aa22.88■■□□□ 1.25
LINC00643-205ENST00000623219 UNC13BO14795 1591 aa22.88■■□□□ 1.25
LINC00643-205ENST00000623219 GCC2Q8IWJ2 1684 aa22.87■■□□□ 1.25
LINC00643-205ENST00000623219 UGGT1Q9NYU2 1555 aa22.87■■□□□ 1.25
LINC00643-205ENST00000623219 CHIC2Q9UKJ5 165 aa22.86■■□□□ 1.25
LINC00643-205ENST00000623219 ARHGAP31Q2M1Z3 1444 aa22.85■■□□□ 1.25
LINC00643-205ENST00000623219 FBXO31Q5XUX0 539 aaPredicted RBP22.85■■□□□ 1.25
LINC00643-205ENST00000623219 EFCAB6Q5THR3 1501 aa22.85■■□□□ 1.25
LINC00643-205ENST00000623219 NEURL4Q96JN8 1562 aa22.84■■□□□ 1.25
LINC00643-205ENST00000623219 KDM5AP29375 1690 aaKnown RBP22.84■■□□□ 1.25
LINC00643-205ENST00000623219 TET3O43151 1660 aa22.84■■□□□ 1.25
LINC00643-205ENST00000623219 KANK1Q14678 1352 aa22.83■■□□□ 1.25
LINC00643-205ENST00000623219 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.83■■□□□ 1.25
LINC00643-205ENST00000623219 ANKRD50Q9ULJ7 1429 aa22.81■■□□□ 1.24
LINC00643-205ENST00000623219 LTBP4Q8N2S1 1624 aa22.8■■□□□ 1.24
LINC00643-205ENST00000623219 PIK3C2BO00750 1634 aa22.79■■□□□ 1.24
LINC00643-205ENST00000623219 ROCK1Q13464 1354 aa22.79■■□□□ 1.24
LINC00643-205ENST00000623219 IQGAP1P46940 1657 aa22.79■■□□□ 1.24
LINC00643-205ENST00000623219 PKD2Q13563 968 aa22.79■■□□□ 1.24
LINC00643-205ENST00000623219 FBXO41Q8TF61 875 aa22.78■■□□□ 1.24
LINC00643-205ENST00000623219 IQGAP3Q86VI3 1631 aa22.78■■□□□ 1.24
LINC00643-205ENST00000623219 SYNMO15061 1565 aa22.76■■□□□ 1.23
LINC00643-205ENST00000623219 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
LINC00643-205ENST00000623219 NCKAP5LQ9HCH0 1330 aa22.75■■□□□ 1.23
LINC00643-205ENST00000623219 MYO5BQ9ULV0 1848 aa22.74■■□□□ 1.23
LINC00643-205ENST00000623219 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
LINC00643-205ENST00000623219 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.74■■□□□ 1.23
LINC00643-205ENST00000623219 E9PCH4 1651 aa22.74■■□□□ 1.23
LINC00643-205ENST00000623219 CERKQ8TCT0 537 aa22.73■■□□□ 1.23
LINC00643-205ENST00000623219 IQSEC2Q5JU85 1478 aa22.73■■□□□ 1.23
LINC00643-205ENST00000623219 RPRD2Q5VT52 1461 aaKnown RBP22.73■■□□□ 1.23
LINC00643-205ENST00000623219 MED14O60244 1454 aa22.71■■□□□ 1.23
LINC00643-205ENST00000623219 SLIT1O75093 1534 aa22.69■■□□□ 1.22
LINC00643-205ENST00000623219 THEMISQ8N1K5 641 aaPredicted RBP22.69■■□□□ 1.22
LINC00643-205ENST00000623219 ADGRB3O60242 1522 aa22.67■■□□□ 1.22
LINC00643-205ENST00000623219 NOS1P29475 1434 aa22.66■■□□□ 1.22
LINC00643-205ENST00000623219 ARHGAP23Q9P227 1491 aa22.66■■□□□ 1.22
LINC00643-205ENST00000623219 SPHKAPQ2M3C7 1700 aa22.64■■□□□ 1.21
LINC00643-205ENST00000623219 NPHP4O75161 1426 aaPredicted RBP22.64■■□□□ 1.21
LINC00643-205ENST00000623219 STRCP1A6NGW2 1772 aa22.63■■□□□ 1.21
LINC00643-205ENST00000623219 ANKLE2Q86XL3 938 aa22.63■■□□□ 1.21
LINC00643-205ENST00000623219 SCAF11Q99590 1463 aaKnown RBP22.62■■□□□ 1.21
LINC00643-205ENST00000623219 CPS1P31327 1500 aa22.62■■□□□ 1.21
LINC00643-205ENST00000623219 ITGAEP38570 1179 aa22.61■■□□□ 1.21
LINC00643-205ENST00000623219 ZNF335Q9H4Z2 1342 aaPredicted RBP22.6■■□□□ 1.21
LINC00643-205ENST00000623219 TMEM131LA2VDJ0 1609 aa22.59■■□□□ 1.21
LINC00643-205ENST00000623219 TMEM2Q9UHN6 1383 aa22.53■■□□□ 1.2
LINC00643-205ENST00000623219 NAIPQ13075 1403 aa22.53■■□□□ 1.2
LINC00643-205ENST00000623219 XIRP1Q702N8 1843 aaKnown RBP22.52■■□□□ 1.2
LINC00643-205ENST00000623219 IDI1Q13907 227 aa22.51■■□□□ 1.19
LINC00643-205ENST00000623219 NUP155O75694 1391 aa22.5■■□□□ 1.19
LINC00643-205ENST00000623219 HFM1A2PYH4 1435 aa22.5■■□□□ 1.19
LINC00643-205ENST00000623219 SLC52A1Q9NWF4 448 aa22.5■■□□□ 1.19
LINC00643-205ENST00000623219 STAG3Q9UJ98 1225 aa22.5■■□□□ 1.19
LINC00643-205ENST00000623219 KIF1BO60333 1816 aa22.49■■□□□ 1.19
LINC00643-205ENST00000623219 EID1Q9Y6B2 187 aa22.47■■□□□ 1.19
LINC00643-205ENST00000623219 LTKP29376 864 aa22.46■■□□□ 1.19
LINC00643-205ENST00000623219 TXNDC2Q86VQ3 553 aa22.45■■□□□ 1.18
LINC00643-205ENST00000623219 ZFYVE9O95405 1425 aa22.44■■□□□ 1.18
LINC00643-205ENST00000623219 CHD2O14647 1828 aaKnown RBP22.43■■□□□ 1.18
LINC00643-205ENST00000623219 CLTCL1P53675 1640 aa22.43■■□□□ 1.18
LINC00643-205ENST00000623219 TRPM2O94759 1503 aa22.43■■□□□ 1.18
LINC00643-205ENST00000623219 NWD1Q149M9 1564 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms