RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.52
CPNE3-210ENST00000621245 CERKQ8TCT0 537 aa18.27■□□□□ 0.52
CPNE3-210ENST00000621245 LTBP4Q8N2S1 1624 aa18.25■□□□□ 0.51
CPNE3-210ENST00000621245 DHX29Q7Z478 1369 aaKnown RBP18.25■□□□□ 0.51
CPNE3-210ENST00000621245 MAP3K1Q13233 1512 aa18.24■□□□□ 0.51
CPNE3-210ENST00000621245 MAST1Q9Y2H9 1570 aa18.24■□□□□ 0.51
CPNE3-210ENST00000621245 PTPRTO14522 1441 aa18.23■□□□□ 0.51
CPNE3-210ENST00000621245 KDM5DQ9BY66 1539 aa18.23■□□□□ 0.51
CPNE3-210ENST00000621245 CROCC2H7BZ55 1655 aa18.22■□□□□ 0.51
CPNE3-210ENST00000621245 RNF17Q9BXT8 1623 aaKnown RBP18.22■□□□□ 0.51
CPNE3-210ENST00000621245 DNMT1P26358 1616 aaKnown RBP18.21■□□□□ 0.51
CPNE3-210ENST00000621245 MROH1Q8NDA8 1641 aa18.2■□□□□ 0.5
CPNE3-210ENST00000621245 MSH5O43196 834 aa18.2■□□□□ 0.5
CPNE3-210ENST00000621245 CEP152O94986 1710 aa18.2■□□□□ 0.5
CPNE3-210ENST00000621245 POLR1AO95602 1720 aaPredicted RBP18.19■□□□□ 0.5
CPNE3-210ENST00000621245 MYOM3Q5VTT5 1437 aa18.19■□□□□ 0.5
CPNE3-210ENST00000621245 NCKAP5LQ9HCH0 1330 aa18.19■□□□□ 0.5
CPNE3-210ENST00000621245 KIF3BO15066 747 aa18.18■□□□□ 0.5
CPNE3-210ENST00000621245 TCOF1Q13428 1488 aaKnown RBP18.17■□□□□ 0.5
CPNE3-210ENST00000621245 EIF2AK4Q9P2K8 1649 aaKnown RBP18.16■□□□□ 0.5
CPNE3-210ENST00000621245 PZPP20742 1482 aa18.16■□□□□ 0.5
CPNE3-210ENST00000621245 FBXO31Q5XUX0 539 aaPredicted RBP18.16■□□□□ 0.5
CPNE3-210ENST00000621245 DMRT2Q9Y5R5 561 aa18.16■□□□□ 0.5
CPNE3-210ENST00000621245 FAM135AQ9P2D6 1515 aa18.16■□□□□ 0.5
CPNE3-210ENST00000621245 PTPN23Q9H3S7 1636 aa18.16■□□□□ 0.5
CPNE3-210ENST00000621245 CFAP65Q6ZU64 1925 aaKnown RBP18.15■□□□□ 0.5
CPNE3-210ENST00000621245 A2ML1A8K2U0 1454 aa18.15■□□□□ 0.5
CPNE3-210ENST00000621245 PLA2R1Q13018 1463 aa18.15■□□□□ 0.5
CPNE3-210ENST00000621245 NEURL4Q96JN8 1562 aa18.15■□□□□ 0.5
CPNE3-210ENST00000621245 ZC3H13Q5T200 1668 aaKnown RBP18.15■□□□□ 0.5
CPNE3-210ENST00000621245 ABCC3O15438 1527 aa18.14■□□□□ 0.49
CPNE3-210ENST00000621245 MIA2Q96PC5 1412 aa18.14■□□□□ 0.49
CPNE3-210ENST00000621245 ZBTB22O15209 634 aa18.13■□□□□ 0.49
CPNE3-210ENST00000621245 TNRQ92752 1358 aa18.12■□□□□ 0.49
CPNE3-210ENST00000621245 ZNF335Q9H4Z2 1342 aaPredicted RBP18.1■□□□□ 0.49
CPNE3-210ENST00000621245 RSPH4AQ5TD94 716 aa18.1■□□□□ 0.49
CPNE3-210ENST00000621245 ABCC5O15440 1437 aa18.08■□□□□ 0.49
CPNE3-210ENST00000621245 WASHC2CQ9Y4E1 1318 aa18.08■□□□□ 0.49
CPNE3-210ENST00000621245 TSPY4P0CV99 314 aa18.08■□□□□ 0.48
CPNE3-210ENST00000621245 TSPY10P0CW01 314 aa18.08■□□□□ 0.48
CPNE3-210ENST00000621245 SPATA31D1Q6ZQQ2 1576 aa18.08■□□□□ 0.48
CPNE3-210ENST00000621245 DUOX2Q9NRD8 1548 aa18.08■□□□□ 0.48
CPNE3-210ENST00000621245 SHANK2Q9UPX8 1470 aa18.07■□□□□ 0.48
CPNE3-210ENST00000621245 DEPDC5O75140 1603 aa18.06■□□□□ 0.48
CPNE3-210ENST00000621245 PRDM15P57071 1507 aaPredicted RBP18.06■□□□□ 0.48
CPNE3-210ENST00000621245 FGD6Q6ZV73 1430 aa18.06■□□□□ 0.48
CPNE3-210ENST00000621245 ERVK-7P63135 1459 aa18.04■□□□□ 0.48
CPNE3-210ENST00000621245 IQSEC2Q5JU85 1478 aa18.04■□□□□ 0.48
CPNE3-210ENST00000621245 DAPK1P53355 1430 aa18.04■□□□□ 0.48
CPNE3-210ENST00000621245 UGGT1Q9NYU2 1555 aa18.04■□□□□ 0.48
CPNE3-210ENST00000621245 UBR1Q8IWV7 1749 aa18.03■□□□□ 0.48
CPNE3-210ENST00000621245 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.03■□□□□ 0.48
CPNE3-210ENST00000621245 KIF15Q9NS87 1388 aa18.03■□□□□ 0.48
CPNE3-210ENST00000621245 NLRP1Q9C000 1473 aa18.02■□□□□ 0.48
CPNE3-210ENST00000621245 STRCP1A6NGW2 1772 aa18.02■□□□□ 0.48
CPNE3-210ENST00000621245 MAPK8IP2Q13387 824 aaPredicted RBP18.02■□□□□ 0.48
CPNE3-210ENST00000621245 PKD2Q13563 968 aa18.02■□□□□ 0.48
CPNE3-210ENST00000621245 VWDEQ8N2E2 1590 aa18.01■□□□□ 0.47
CPNE3-210ENST00000621245 IQGAP1P46940 1657 aa18■□□□□ 0.47
CPNE3-210ENST00000621245 ERBINQ96RT1 1412 aa17.98■□□□□ 0.47
CPNE3-210ENST00000621245 RRP7BPQ9NSQ0 103 aa17.98■□□□□ 0.47
CPNE3-210ENST00000621245 PIK3C2BO00750 1634 aa17.96■□□□□ 0.47
CPNE3-210ENST00000621245 MED14O60244 1454 aa17.95■□□□□ 0.46
CPNE3-210ENST00000621245 APLP2Q06481 763 aa17.94■□□□□ 0.46
CPNE3-210ENST00000621245 CHIC2Q9UKJ5 165 aa17.94■□□□□ 0.46
CPNE3-210ENST00000621245 NPHP4O75161 1426 aaPredicted RBP17.93■□□□□ 0.46
CPNE3-210ENST00000621245 ALKQ9UM73 1620 aa17.93■□□□□ 0.46
CPNE3-210ENST00000621245 SYNMO15061 1565 aa17.92■□□□□ 0.46
CPNE3-210ENST00000621245 ADGRL2O95490 1459 aa17.91■□□□□ 0.46
CPNE3-210ENST00000621245 CPS1P31327 1500 aa17.91■□□□□ 0.46
CPNE3-210ENST00000621245 ARHGAP31Q2M1Z3 1444 aa17.9■□□□□ 0.46
CPNE3-210ENST00000621245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.9■□□□□ 0.46
CPNE3-210ENST00000621245 EFCAB6Q5THR3 1501 aa17.89■□□□□ 0.45
CPNE3-210ENST00000621245 LMTK2Q8IWU2 1503 aa17.89■□□□□ 0.45
CPNE3-210ENST00000621245 UBAP1LF5GYI3 381 aa17.89■□□□□ 0.45
CPNE3-210ENST00000621245 ANKLE2Q86XL3 938 aa17.89■□□□□ 0.45
CPNE3-210ENST00000621245 THEMISQ8N1K5 641 aaPredicted RBP17.89■□□□□ 0.45
CPNE3-210ENST00000621245 XIRP1Q702N8 1843 aaKnown RBP17.88■□□□□ 0.45
CPNE3-210ENST00000621245 MYO5BQ9ULV0 1848 aa17.88■□□□□ 0.45
CPNE3-210ENST00000621245 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
CPNE3-210ENST00000621245 ANKRD30AQ9BXX3 1397 aa17.87■□□□□ 0.45
CPNE3-210ENST00000621245 SLIT1O75093 1534 aa17.87■□□□□ 0.45
CPNE3-210ENST00000621245 DISP3Q9P2K9 1392 aa17.86■□□□□ 0.45
CPNE3-210ENST00000621245 ILDR2Q71H61 639 aa17.85■□□□□ 0.45
CPNE3-210ENST00000621245 SCAF11Q99590 1463 aaKnown RBP17.85■□□□□ 0.45
CPNE3-210ENST00000621245 KDM5AP29375 1690 aaKnown RBP17.84■□□□□ 0.45
CPNE3-210ENST00000621245 FAM50AQ14320 339 aaKnown RBP17.84■□□□□ 0.45
CPNE3-210ENST00000621245 LTKP29376 864 aa17.83■□□□□ 0.44
CPNE3-210ENST00000621245 UNC13BO14795 1591 aa17.83■□□□□ 0.44
CPNE3-210ENST00000621245 LRRC7Q96NW7 1537 aa17.82■□□□□ 0.44
CPNE3-210ENST00000621245 TET3O43151 1660 aa17.81■□□□□ 0.44
CPNE3-210ENST00000621245 GCC2Q8IWJ2 1684 aa17.81■□□□□ 0.44
CPNE3-210ENST00000621245 ADGRB3O60242 1522 aa17.81■□□□□ 0.44
CPNE3-210ENST00000621245 NOS1P29475 1434 aa17.81■□□□□ 0.44
CPNE3-210ENST00000621245 KANK1Q14678 1352 aa17.8■□□□□ 0.44
CPNE3-210ENST00000621245 FOXD4L1Q9NU39 408 aa17.79■□□□□ 0.44
CPNE3-210ENST00000621245 E9PCH4 1651 aa17.79■□□□□ 0.44
CPNE3-210ENST00000621245 ANKRD50Q9ULJ7 1429 aa17.79■□□□□ 0.44
CPNE3-210ENST00000621245 PIP4K2BP78356 416 aa17.78■□□□□ 0.44
CPNE3-210ENST00000621245 RNF216Q9NWF9 866 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms